PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462915568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 781aa MW: 87138.7 Da PI: 7.996 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 704 | 775 | 17 | 92 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +lp f+ ++g+ +++++tl+ ++ sWev ++ kks+++ + GWk+F+++n+Lk+gD++++ se++l 462915568 704 CLPAAFCHAIGIRETCTVTLKTSLSNTMSWEVCIQPYKKSSHH-VEPGWKRFCQENNLKVGDVCTINI---SETTL 775 69*****999*99999766665557779999999666666566.566******************994...34444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-14 | 291 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-13 | 292 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.742 | 294 | 389 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.44E-9 | 295 | 386 | No hit | No description |
SMART | SM01019 | 1.7E-5 | 297 | 389 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-9 | 463 | 552 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.96 | 464 | 553 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-9 | 465 | 551 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.97 | 691 | 780 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-12 | 703 | 774 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.1E-12 | 704 | 779 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.87E-12 | 704 | 770 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.35E-9 | 705 | 768 | No hit | No description |
PROSITE profile | PS50863 | 10.348 | 705 | 781 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 781 aa Download sequence Send to blast |
MDDNIHDTYD RCMHQYSCSL STSDNNLPQH SFNNFEGADV PFLEPVILAE PPPVLPQLVT 60 AILLDNMNLP EFGAVDKGLE RDDACDLPQH GFDNVEGTNV AFLKPVVLTE FLPTISKVAG 120 IVHRPRFGKR TFTCRRDAEL PDAEAGVERL DGEGAAAFVP ERDEPGDIDA VRRQELGPPA 180 AQERLLAFSF DLHAPDFAKR AHHEREAHVG GVEATGELLG DALQNEDQSL ECRRFRSINA 240 GLCLPAFRWE ETATASGAWP WRLLPVAARC RDLVEGEGSF AFEATMSSKG APRKPQFIGL 300 LSPDSMEKMP IPPEFVQRYL PKENLDIAVV LGPLDKKLWR IKLEMNQSDV LFAGRWPEFL 360 KFNHITKDNV LLLRYEANMV FTVKVFEPNG FQREYKQKDI RMQETVPDIE KQQEAQSASF 420 QKGKSKSNRT CTEGQNKPNG SMASLTEASS RKKCTYEIGP PAWITKCINA NALKKQLALP 480 TSFCDAIGLR ESCMITLKTS VNSAEDWKVH GVSCKKGSYL LVFFWENSLK EGDACTFNVV 540 ETSLWHVVIT RLKENINPPC NATPSASRGK CKNSKRRKIS VNSMNKSPKM GCNYNIGPPA 600 WVVKQMNNNT IKNRLGRSPV ETVLGSGPPL PDGRLGRIQP VIPLRHQSPL AFMSCYRMFA 660 CVRERKQDVR SKVQTILLYE AALSALAASC AHRQSLAPRA AEQCLPAAFC HAIGIRETCT 720 VTLKTSLSNT MSWEVCIQPY KKSSHHVEPG WKRFCQENNL KVGDVCTINI SETTLWHGAI 780 K |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462915568 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808161.1 | 2e-94 | putative B3 domain-containing protein Os04g0347400 isoform X2 | ||||
Refseq | XP_025825039.1 | 3e-94 | putative B3 domain-containing protein Os04g0347400 isoform X1 | ||||
TrEMBL | A0A0A9RFZ7 | 1e-114 | A0A0A9RFZ7_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Gb02050.1.p | 1e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-08 | B3 family protein |