PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915514
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 589aa    MW: 65441.9 Da    PI: 5.1094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915514genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.4e-1375162197
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffkv+     ++++ + +p +fa+++ ++   +   + led+ g +W+v+l  + ++g   ++ GWk+F  ++ +  g+f+vF+ + rs f  +v++f
  462915514  75 FFKVM--MGCFSED-MDIPPPFAKTIlDLA--G-SNIYLEDSFGLRWRVRL--CLRDGVLSFGHGWKNFILDHAVSCGEFLVFRQIARSVF--TVQMF 162
                66777..5566666.9*******9996333..3.37***************..88999999***********************9888888..77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2069165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-1771165IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.08372165IPR003340B3 DNA binding domain
CDDcd100171.34E-1474162No hitNo description
PfamPF023623.5E-1075162IPR003340B3 DNA binding domain
SMARTSM010192.9E-1175165IPR003340B3 DNA binding domain
SMARTSM010190.044492584IPR003340B3 DNA binding domain
CDDcd100178.10E-10518581No hitNo description
SuperFamilySSF1019361.18E-12518586IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-10519586IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.939524584IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MVEVIIALKK EQEDDGVVDI DSGDEGAGKV VKRRRKKKEC DPHKKRACVD CTKRCARIHG  60
RVSSSSRPTP EVLSFFKVMM GCFSEDMDIP PPFAKTILDL AGSNIYLEDS FGLRWRVRLC  120
LRDGVLSFGH GWKNFILDHA VSCGEFLVFR QIARSVFTVQ MFAPSAIERL YLCERNKRQS  180
RKRKPRQKTN SPATETVRIS KNNGESCKRK RLTDNPNDQV PSDCTMSVHV CIDDSDVPDS  240
ASELKCSETS EKALEAGPLE SQEVSNAFTR HQGNAQRVLD GQIEIVDNCA IFTENPISDA  300
TEIDHVQGSS LPPNVDASGP LAMMDLNEVI IDDIYLSADI YEFESGICDT EAFSVDQNKE  360
RQIPDGHTSG LNCLEHDLPN QHYSMGVGQG LFMSERLPCI ENKQMVDVLE TCEGFVAADS  420
AVIQDKPQDG QVDMQDSKGQ HAAEIMSSSP RPQELSRPGK DPLETGNNSG DLQSGSTESG  480
GVLALEANGR KFCVPVPAPG QTWIELPSRL PVLPRTKKQG RKVVILKDPC MRLWPVMYQC  540
APRFSGFITG WVDISRENNL QEGDICEFEF SDNRELSFQL RSSHCCPAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137KRRRKKK
23145KRRRKKKECDPHKKR
33338RRKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915514
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972298.10.0B3 domain-containing protein Os01g0905400 isoform X1
TrEMBLK3XQF50.0K3XQF5_SETIT; Uncharacterized protein
STRINGSi004140m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-08B3 family protein