PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462915502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 347aa MW: 36577.7 Da PI: 9.5329 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.5 | 1.6e-42 | 37 | 112 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls +k y+ rhkvC++hskap v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrr++ 462915502 37 RCQVEGCNVDLSGVKPYYCRHKVCSMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRRP 112 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.9E-34 | 32 | 99 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.342 | 35 | 112 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.5E-41 | 36 | 115 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-32 | 38 | 111 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
GSGSAPPPPP ASPKAAGAGG GRKGKGGASS SAAPPARCQV EGCNVDLSGV KPYYCRHKVC 60 SMHSKAPRVV VAGLEQRFCQ QCSRFHLLPE FDQGKRSCRR RLAGHNERRR RPPPGPLASR 120 YGRIASSFGE EPGRMRSFLL DFSYPRVASS MRDGWPAVRP GERVPGSIQW QANLDPHHHH 180 SAVAAYGAHS YAIQGSSSSG PPVFPGPEFP PGGCLTGVPA DSSCALSLLS TQPWDTTHSA 240 SHNRAATLST TAGFDGNPVA PSLMASNYIA PSPWTGPRGH EGGRSVPPQL PPEVPLDEVH 300 SGSSHHGQFS GELELALQGN RPAPPRRLDQ GSSSTFSQAG NTTDWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 38 | 111 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462915502 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821402.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q7EXZ2 | 1e-152 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A1E5VH98 | 0.0 | A0A1E5VH98_9POAL; Squamosa promoter-binding-like protein 14 | ||||
STRING | Pavir.Fb01946.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 4e-43 | squamosa promoter binding protein-like 9 |