PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915237
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 618aa    MW: 69069.5 Da    PI: 6.8082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915237genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.5e-1741130199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffkv+  +  ++++ +++p +fa++++g       +tl++   + W++ +   +  +++v+++GWk+Fv a+ L+egD +vFk+ g s+f   v +f++
  462915237  41 FFKVM--AGDFAQS-ISIPTRFANNFNGHI--AEVVTLKSAGHKIWNISV--GGDADEIVFRSGWKDFVGAHSLEEGDYLVFKYAGVSSF--DVLIFDS 130
                67777..6666666.9*******8886663..447***************..*********************************99999..8998886 PP
2B353.25.4e-172853671199
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 k+g++++p +fa++++g       +tl++   + W++ +   +  +++v+++GWk+Fv a+ L+egD +vFk+ g s+f   v +f++
  462915237 285 KKRGLVSIPTRFANNFNGHI--AEVVTLKSAGHKIWNISV--GGDADEIVFRSGWKDFVGAHSLEEGDYLVFKYAGVSSF--DVLIFDS 367
                467899*******8886663..447***************..*********************************99999..8998886 PP
3B345.61.3e-145226091199
                HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                 k+g++ ++ +fa++++g     ++++l+  +s  +W v ++ +k s++ + ++GW +Fv++ngL e D+++F++++  ++ +++v+v rk
  462915237 522 KKRGLVAVSSEFATKYMGT--LRREIILQRaSSRGTWHVSYNCNKFSRG-LCGRGWCSFVEDNGLLEHDVCLFEVMQGaRRPTMTVHVMRK 609
                456888999*******887..56689999945669******87777766.7899********************99777999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-2235133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2137136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.66238131IPR003340B3 DNA binding domain
CDDcd100174.29E-1739129No hitNo description
SMARTSM010192.1E-1041131IPR003340B3 DNA binding domain
PfamPF023622.5E-1441129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-23266370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-23267373IPR015300DNA-binding pseudobarrel domain
CDDcd100178.39E-19271366No hitNo description
SMARTSM010192.1E-9273368IPR003340B3 DNA binding domain
PfamPF023622.8E-14285366IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296290368IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-19503608IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-17504608IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-11508605No hitNo description
SMARTSM010190.001510610IPR003340B3 DNA binding domain
PfamPF023623.4E-12523609IPR003340B3 DNA binding domain
PROSITE profilePS508639.53527610IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MRMLSSNQYK SMQNSGKNCS VCMEWQEHCY WSHMADEEKH FFKVMAGDFA QSISIPTRFA  60
NNFNGHIAEV VTLKSAGHKI WNISVGGDAD EIVFRSGWKD FVGAHSLEEG DYLVFKYAGV  120
SSFDVLIFDS SGCEKTSPHF ANNHVYERIE GPASIEGGRH GCHRFNKGKT CTPQSLPSDD  180
DDGNAPLEAA FHKNTSRNIP KGSKRNLSDV IEQAQCEVKD GEDDTELDED AAPAKTGYYF  240
CKNGPVMEYH LTLEEKEEIS SIRVPVQPRN PVFVQVMHPG HVRGKKRGLV SIPTRFANNF  300
NGHIAEVVTL KSAGHKIWNI SVGGDADEIV FRSGWKDFVG AHSLEEGDYL VFKYAGVSSF  360
DVLIFDSSGC EKTSPHFANN HVYERIEGPA SIEGGRHGCH RFNKGKTCTP QSLPSDDDDG  420
NAPLEAAFHK NTSRNIPKGS KRNLSDVIEQ AQCEVKDGED DTELDEDAAP AKTGYYFCKN  480
GPVMEYHLTL EEKEEISSIR VPVQPRNPVF VQVMHPGHVR GKKRGLVAVS SEFATKYMGT  540
LRREIILQRA SSRGTWHVSY NCNKFSRGLC GRGWCSFVED NGLLEHDVCL FEVMQGARRP  600
TMTVHVMRKV RGRFVLLR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915237
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.21e-152B3 domain-containing protein Os03g0622200
SwissprotQ10GM36e-93Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A0A9BKP41e-162A0A0A9BKP4_ARUDO; Uncharacterized protein
STRINGSi040023m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]