PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462915159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 183aa MW: 19697 Da PI: 8.2179 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49.6 | 6.2e-16 | 142 | 167 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg 462915159 142 FKTELCNKWEETGACPYGDQCQFAHG 167 79***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-19 | 136 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-11 | 138 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-10 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-13 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MQEALVSPVH ADRLRSALEL KPFAFGDQRL ASPRYFGGCG GDHALFRCSS PFSPSFGFSS 60 PSPLATSVSL SPSSSASLAD DLPAKAPASP VANNRKPRAS NPTINNHGSQ RVYVDGGVKG 120 EEAKEQRASG GVELEVYNQG MFKTELCNKW EETGACPYGD QCQFAHGVAE LRPVIRHPRY 180 KTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-13 | 142 | 183 | 4 | 45 | Butyrate response factor 2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462915159 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042147 | 6e-74 | BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds. | |||
GenBank | KJ727011 | 6e-74 | KJ727011.1 Zea mays clone pUT3992 C3H transcription factor (C3H21) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969302.1 | 2e-52 | zinc finger CCCH domain-containing protein 9 isoform X1 | ||||
TrEMBL | K3XJH7 | 4e-51 | K3XJH7_SETIT; Uncharacterized protein | ||||
STRING | Si002050m | 7e-52 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-29 | C3H family protein |