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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462915047 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 208aa MW: 22591 Da PI: 9.8835 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.3 | 1.1e-26 | 19 | 136 | 1 | 103 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e + + + L ++ +++ewyfF++rd+ky++g+r+nra+ +gyWka 462915047 19 LPPGFRFHPTDEELVVHYLKKKAASLPLPV-TIIAEGEPLPCFFLALFFllilchgfenpllilSALFGRREWYFFTPRDRKYPNGSRPNRAAGRGYWKA 117 79*************************999.6677777666666666424566666666665543334889***************************** PP NAM 86 tgkdkevlsk.kgelvglk 103 tg dk++ k + + g+k 462915047 118 TGADKPIAPKgTARPAGIK 136 *******987444456666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-30 | 16 | 130 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.212 | 19 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-17 | 20 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVAAPEGSGR RDAEAELNLP PGFRFHPTDE ELVVHYLKKK AASLPLPVTI IAEGEPLPCF 60 FLALFFLLIL CHGFENPLLI LSALFGRREW YFFTPRDRKY PNGSRPNRAA GRGYWKATGA 120 DKPIAPKGTA RPAGIKNSTS TASPTPTAPP ARRGPRRYAS QPPHSPPAPF HAYHAFMLIS 180 LVSCVVAVGR VGALPAVQQE EQLGEGEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-46 | 11 | 138 | 7 | 117 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462915047 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947340 | 8e-46 | EU947340.1 Zea mays clone 339956 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623706.1 | 8e-55 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 7e-56 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A3L6QYH5 | 8e-54 | A0A3L6QYH5_PANMI; NAC domain-containing protein 68-like | ||||
STRING | OS01T0816100-01 | 3e-54 | (Oryza sativa) | ||||
STRING | ORGLA01G0288400.1 | 3e-54 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 8e-39 | NAC domain containing protein 32 |