PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914403
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 590aa    MW: 65778.7 Da    PI: 8.8658
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914403genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.71.6e-074394248
       FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....t 48
               fY  Y+++vGF+ r+ ++++s  +ge ++++f C +  ++++ +k       
  462914403 43 FYYGYGERVGFKARTGSNRRSVGDGEKIMQRFLCWRGNYTNRGSKGkdsdeV 94
               9**********************************98887776666333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-54393IPR004330FAR1 DNA binding domain
PROSITE profilePS511528.556221281IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
GKWKVSKLVV EHNHELQVAP GEVSATVPAL GMEFDSVEDA KGFYYGYGER VGFKARTGSN  60
RRSVGDGEKI MQRFLCWRGN YTNRGSKGKD SDEVKELVEV DEGAATTSGK RKREPYKTRS  120
RKPVTKNSDV IEVENGPGMA DAGNEKGSRR GKSKKDLVEK DGEPVGMDMA HDGTADDEEE  180
DEGEGGEDGV DGEVQVVVKE KRGRGRPRKN VTDDDALQAR VLRELGLRAL QYDSDERKKI  240
LSKYLSKRQS RPASGRPTKI ASRQALAERR KRGDGGRFLA SEGHQPLQQP SERRSKRLER  300
QNLKIEEEKA ESKEDEIIEA EPDPETEVVA GPGGEPKVGM VFLNEDKAYE FYVNYAGTAG  360
FSVRKAKASE SIEAHTFLEN QYEQLLEQLE NEVSNSEPRR ATSKKNKNVE VRRQQQSSVD  420
ANKKKKGRQG LPEPEEMEIP LRVDPPTVSN DIPNHLRNPT NQFLAPSHIM QAPYVTQQFG  480
LGSLQGFPGM SPFGQNQHLG LFNNRLTYNH HLFIVVHKSP RPHLRTYNPC NSSAAILNWA  540
TKPRIKANTP FLSGIFCDVL LPHLTMASLL VPTPIFRTNI LGSIVVENGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148155RRGKSKKD
2200208KRGRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914403
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981561.41e-157protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1E5UM031e-155A0A1E5UM03_9POAL; Uncharacterized protein
TrEMBLA0A3L6TUH11e-153A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGOMERI03G32600.11e-176(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.15e-09FAR1-related sequence 12