PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914050
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 431aa    MW: 48573.9 Da    PI: 6.8784
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914050genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.41.2e-89214304369
       GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                +L+ecA +v++g++e++++ L +++ las  + ++qRl + ++  La+r++   ++   al +ps+  e  +s+  +a++ f ++ P++  +++t NqaI
  462914050  21 VLYECAVHVTEGNFEKTDNSLRQIKGLASIVDGSLQRLSSTIAYSLARRILCPIQGFDGALiHPSDYFE--QSSIQTARENFANLNPYISTGFVTINQAI 118
                699*************************************************88888877755555554..4555568888******************* PP

       GRAS 103 leavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rv 196
                lea+e+e+ v iiD++  +s++ QW+ Ll+ + +Rp+gpp++R T v++    +++ l ++++ L+k Ae+l++pf+f+  v  rle+l+l++L    ++
  462914050 119 LEALEEEKVVRIIDLScsVSHPWQWLKLLHDFRQRPGGPPEVRFTFVHD----DSDYLAKMQKLLSKEAEALKIPFQFTC-VIGRLETLDLSNLrntlQI 213
                **************9633789****************************....9**************************.7999999999988443356 PP

       GRAS 197 kpgEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                k gEa+a++++l++hr+l                                           s ++++   ++L++v+ l+P+++ v+eq+a+hn+  F +
  462914050 214 KFGEAVAISCALEMHRMLvvddnvtcagiaqlqrmtniaqlkqmassvyspastlyypqTPSPQTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCD 313
                66*******************************************************98666777778889***************************** PP

       GRAS 256 rflealeyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                rf+e l+yy+alfdsl ++ +++++  +er+ vEr++lg+ei+n++ ceg +r erhe+l +W + ++ +GF+ vpls +a  + +  l  ++ ++ + +
  462914050 314 RFVEVLNYYAALFDSLhAVAVASQQkaDERARVERMILGEEIKNILVCEGVRRYERHERLIQWAMFMQGSGFNHVPLSFSAIRKCNEQLMSFGLKECQSK 413
                ****************777777666779*****************************************************************888**** PP

       GRAS 353 eesgslvlgWkdrpLvs 369
                ++ g+l+l+W + +L+s
  462914050 414 QDTGCLLLCWASTQLYS 430
                ***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.0671415IPR005202Transcription factor GRAS
PfamPF035144.2E-8721430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQKSSVQDHA TVDRLAQLGP VLYECAVHVT EGNFEKTDNS LRQIKGLASI VDGSLQRLSS  60
TIAYSLARRI LCPIQGFDGA LIHPSDYFEQ SSIQTARENF ANLNPYISTG FVTINQAILE  120
ALEEEKVVRI IDLSCSVSHP WQWLKLLHDF RQRPGGPPEV RFTFVHDDSD YLAKMQKLLS  180
KEAEALKIPF QFTCVIGRLE TLDLSNLRNT LQIKFGEAVA ISCALEMHRM LVVDDNVTCA  240
GIAQLQRMTN IAQLKQMASS VYSPASTLYY PQTPSPQTPK LLASFLNAVR ALKPNIMLVM  300
EQDANHNALL FCDRFVEVLN YYAALFDSLH AVAVASQQKA DERARVERMI LGEEIKNILV  360
CEGVRRYERH ERLIQWAMFM QGSGFNHVPL SFSAIRKCNE QLMSFGLKEC QSKQDTGCLL  420
LCWASTQLYS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-352443025374Protein SCARECROW
5b3h_A2e-352443024373Protein SCARECROW
5b3h_D2e-352443024373Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683876.10.0scarecrow-like protein 3
TrEMBLA0A0A9C2J40.0A0A0A9C2J4_ARUDO; Uncharacterized protein
STRINGPavir.J24605.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-81scarecrow-like 3