PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913740
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 951aa    MW: 104583 Da    PI: 8.2754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913740genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012206227223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                kC++C++ F ++ n++rH r+H
  462913740 206 KCTKCSREFCSSINFRRHTRVH 227
                7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.702205227IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.7204.1E-41668922IPR016040NAD(P)-binding domain
SuperFamilySSF517352.7E-37670927IPR016040NAD(P)-binding domain
PfamPF001066.0E-11673755IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.6E-10673690IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.6E-10795811IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.6E-10859876IPR002347Short-chain dehydrogenase/reductase SDR
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MPGPYCPRQK LAYLFSFLSF LLCSLISPAA VHTPAVPGRP AASLHCCSSS AVRQRLRRSK  60
FVRPPSLIQA AARTLSCSKA LTTAAARPAR LLQGRPAALL HTSEVCTHIA SEAAIGVGSG  120
VEIHTRRRRP STDLQLEMNA SKRYNHITDK DDAETDIMTT SGQIQPLKIP DAVVALAQAA  180
AKANGETEKY LPGWPLFSPP KLQLDKCTKC SREFCSSINF RRHTRVHRRT LKLDKDFPKN  240
RDHIAAFWDK LTVDEAKTIL SFLDVAIEGE ADKVATELKN VVACASYILE KKLVEAWSAD  300
KAAEALRCQK LLVEEEEAAQ KRQAELMERK RMKKLRQKEQ RSKDLKDEEV SVHLSEIVIV  360
ASGSPRIQSL KDVSDPGLYE QDSHHPQFEA QDDNGFNVDR SVEGISYDSG HEMGAGVITT  420
QQVISRHHIG GTENHAQNSF SSGTALAPKH AARHSSYRNT NVCTLSNRNK TWERKVRADI  480
EEQCPKHELD TDDGLGKSSR VLIGSISVAI EDGSEHSQEF RDPKHDSASP SSKITNNSVT  540
EMTELLRHEE SRNNDNITPA VEKHLSSSVM TYDNSSSTLW NTDLAGCGRL QCTTFSSEEA  600
TAFLSRNCPE ETTPRLPSSV LPPERRIHRN LDSPFVGGKM LTSLLLGRKG PSGFSWSSTA  660
DEVTTGVSAA GLTAIVTGAS SGIGAETART LALRGAHVVM AVRSLPAAQE LRDAVLAQAP  720
EAKLDVMELD LSSMASVRTF ASEYISRGLP LNILMCVFLL CSSWLIPSRS PPACSLGWHF  780
LLTHLLLDTM KKTSRESNVE GRIVNVSSEG HRFAYKEGIR FEKINDESVY SSIGAYGQSK  840
LANILHANEL SRRFKEEGVN ITANSLHPGS IITNLLRHHS ILDVIHRTFG KLVLKNAQQG  900
AATTCYVALH PQVKGVSGKY FCDSNVYEPS EKAKDMGLAK RLWDFSIELI T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3rd5_A5e-246659494284MYPAA.01249.C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327334ERKRMKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680015.10.0uncharacterized protein LOC101770765
TrEMBLM7Z8M40.0M7Z8M4_TRIUA; WW domain-containing oxidoreductase
STRINGTRIUR3_22095-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.15e-26C2H2-like zinc finger protein