PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913692
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 319aa    MW: 36823 Da    PI: 6.7346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913692genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59.2e-1728116198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffk +     +++g +++p kf+++++g+ ++   + l+ +s+++W + +  +k+++++++t+ W++Fvka++L+e+D ++F+ +++s+f   v++f+
  462913692  28 FFKLM--TGDFARG-ISMPEKFVKNFKGQITK--GVDLKAPSSETWHIGV--DKNDNEMFFTSEWEDFVKAHELQENDLLLFTSSDSSSF--EVMIFE 116
                55655..4555665.99******999888555..59**************..*******************************6665888..888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.33725118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-1927120IPR015300DNA-binding pseudobarrel domain
CDDcd100178.20E-1727115No hitNo description
SuperFamilySSF1019366.47E-2027122IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-1028118IPR003340B3 DNA binding domain
PfamPF023622.7E-1428117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-6229293IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAETGCARCR EWQEHYYWEH MDVTKIRFFK LMTGDFARGI SMPEKFVKNF KGQITKGVDL  60
KAPSSETWHI GVDKNDNEMF FTSEWEDFVK AHELQENDLL LFTSSDSSSF EVMIFESSGC  120
EKVSSLFDSY HTYKHLNNTR RHCERNSLSD SDNSSMPSRL IGSQHNASTS KKSSMKESES  180
LNNSSYDTKH EATEEEESDD IYCDSKYYYS RSANRLAYEE RKTILSLASV KADNPAFVTI  240
LQKNHRQRRN NSMTVPSDFA ADHLEARSDD TILCRPNRKE KWLVKYYYTP LQPVLAKPGS  300
FSSLCVKTSF VRVTFASLS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913692
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616591e-30AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.11e-134B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT23e-96Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP51e-134A0A2T7EIP5_9POAL; Uncharacterized protein
STRINGSi024966m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-16B3 family protein