PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913692 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 319aa MW: 36823 Da PI: 6.7346 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 9.2e-17 | 28 | 116 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk + +++g +++p kf+++++g+ ++ + l+ +s+++W + + +k+++++++t+ W++Fvka++L+e+D ++F+ +++s+f v++f+ 462913692 28 FFKLM--TGDFARG-ISMPEKFVKNFKGQITK--GVDLKAPSSETWHIGV--DKNDNEMFFTSEWEDFVKAHELQENDLLLFTSSDSSSF--EVMIFE 116 55655..4555665.99******999888555..59**************..*******************************6665888..888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.337 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.8E-19 | 27 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.20E-17 | 27 | 115 | No hit | No description |
SuperFamily | SSF101936 | 6.47E-20 | 27 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.5E-10 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-14 | 28 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-6 | 229 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAETGCARCR EWQEHYYWEH MDVTKIRFFK LMTGDFARGI SMPEKFVKNF KGQITKGVDL 60 KAPSSETWHI GVDKNDNEMF FTSEWEDFVK AHELQENDLL LFTSSDSSSF EVMIFESSGC 120 EKVSSLFDSY HTYKHLNNTR RHCERNSLSD SDNSSMPSRL IGSQHNASTS KKSSMKESES 180 LNNSSYDTKH EATEEEESDD IYCDSKYYYS RSANRLAYEE RKTILSLASV KADNPAFVTI 240 LQKNHRQRRN NSMTVPSDFA ADHLEARSDD TILCRPNRKE KWLVKYYYTP LQPVLAKPGS 300 FSSLCVKTSF VRVTFASLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913692 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY661659 | 1e-30 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808343.1 | 1e-134 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 3e-96 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A2T7EIP5 | 1e-134 | A0A2T7EIP5_9POAL; Uncharacterized protein | ||||
STRING | Si024966m | 1e-126 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-16 | B3 family protein |