PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913660
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 346aa    MW: 39707.8 Da    PI: 7.1391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913660genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.63.9e-1744133199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffkv+     +++  +++p kfa+++ g+   +  ++le ++g+ ++v +  +k +++ v+++GW  F +a +Lk+gD +vF+++g+s+f  +v +f+ 
  462913660  44 FFKVM--VGDFQQ-EMTVPEKFANNFRGQV--GEIVKLEAPDGNMYNVHV--SKDQNKLVFRSGWGTFSSAYELKQGDLLVFRYSGDSNF--KVLIFDP 133
                56666..444554.59*******8886664..348***************..9*********************************9999..9999985 PP
2B344.42.9e-142593311589
                -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SE CS
         B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.se 89 
                r+ ++++faee+   ++ s+t++l+  e + sWev+l   k  + + l +GWk+Fv++n L++gD+++F+ ldg   +
  462913660 259 RMGFSRDFAEEYL--PRASRTVRLRRpELSCSWEVEL---KIHEVHRLCRGWKQFVDDNALRQGDMCIFQpLDGGsGG 331
                78899*******5..45778******6667*******...55567899**********************76655333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-2337136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2338136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.47841134IPR003340B3 DNA binding domain
CDDcd100176.20E-2142132No hitNo description
SMARTSM010191.3E-1244134IPR003340B3 DNA binding domain
PfamPF023623.7E-1544132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16241344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-15243344IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603245346IPR003340B3 DNA binding domain
SMARTSM010191.4E-7249346IPR003340B3 DNA binding domain
CDDcd100173.51E-15259344No hitNo description
PfamPF023625.2E-11259330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MASRDHEYDG GSGHKISSGS CCRRCRHCYE HNYWDHLDNR QKHFFKVMVG DFQQEMTVPE  60
KFANNFRGQV GEIVKLEAPD GNMYNVHVSK DQNKLVFRSG WGTFSSAYEL KQGDLLVFRY  120
SGDSNFKVLI FDPSGCFAVA EDVPSPEDIQ DPSNSGERQT STESHFILAE GCNLTREQRD  180
SIDTLEKKIR PETPLYVTHL NKTKLGTSSP NRVVLPAQYM VTKQTKLTPE QKKKVEEKLQ  240
EIQPATPVFL SIKRRCDIRM GFSRDFAEEY LPRASRTVRL RRPELSCSWE VELKIHEVHR  300
LCRGWKQFVD DNALRQGDMC IFQPLDGGSG GEEAEVNMHV HVIRGE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SWD38e-99A0A3L6SWD3_PANMI; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-25B3 family protein