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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 20022.4 Da PI: 5.5811 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.7 | 8.1e-22 | 30 | 117 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 fk + ++++ +++p kf+e+++gk +k++ l+ +sg+ W v + +k+ ++ +l++GW++Fvka++L+e+D +vF+++g+s+f v +f+ 462913657 30 FKFM--TGDFAKA-ISIPEKFVENFNGK--ITKEVNLKAPSGEIWHVSV--DKNADELFLKSGWEDFVKAHELQENDLLVFTFSGNSSF--EVLIFE 117 5555..3444554.9*******999888..6779***************..**********************************9999..777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.69E-25 | 22 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.326 | 26 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.74E-21 | 28 | 116 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-24 | 28 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.1E-16 | 29 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-19 | 29 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MMVERGCESC RKWQEHYYWE HMDVSKIRFF KFMTGDFAKA ISIPEKFVEN FNGKITKEVN 60 LKAPSGEIWH VSVDKNADEL FLKSGWEDFV KAHELQENDL LVFTFSGNSS FEVLIFEANG 120 CEKVSSLSAN KTGANMLKHS ANKANWGKHD EHYSLSDSED TTKPSQLVGS PQDATT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913657 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808344.1 | 6e-87 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 4e-67 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A2T7EIP4 | 5e-86 | A0A2T7EIP4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00511.1.p | 1e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-27 | B3 family protein |