PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913654
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 370aa    MW: 42498.3 Da    PI: 8.3693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913654genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.4e-1840130199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk +     +++g +++p kf ++++g+   sk+  l+ ++g++W + +  +k  ++  +l++GW++Fvka++L+e+D ++F+ +g+s+f  +v +f++
  462913654  40 FFKLM--TGDFARG-ISIPVKFGKNFNGN--ISKEFNLKAPNGETWHIGV--DKDADGlLFLKSGWEDFVKAHKLQENDLLIFTCSGNSSF--KVLIFEA 130
                55655..4555665.9*******998888..889****************..99999999************************9999999..8888875 PP
2B340.35.6e-13263361199
                EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
         B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                ff+vl  s+v ++ + l++p +fa++h  + + + +++l    +  +W vk+  ++++++  +   +  +Fv++n+L+egD++ F+l++  ++ +++v++
  462913654 263 FFTVLQMSHVRRRnNFLIFPSRFAADHLDN-RLH-EIILCRpNRKDKWCVKY--KRGRDTqGIRNYNFFKFVRENKLREGDICAFELMKGaKRVTMTVHA 358
                7888888888877466799********544.454.55555527779******..555444234456899*****************99877**99***99 PP

                E-S CS
         B3  97 frk 99 
                +rk
  462913654 359 IRK 361
                987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-2333133IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.50737131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-2239133IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-1839128No hitNo description
PfamPF023621.3E-1540130IPR003340B3 DNA binding domain
SMARTSM010191.6E-1340131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-17254360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16256360IPR015300DNA-binding pseudobarrel domain
CDDcd100175.40E-13261360No hitNo description
PfamPF023621.4E-11263361IPR003340B3 DNA binding domain
SMARTSM010199.2E-9263362IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588264360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MECTATALVE CSIVEKGCAS CKEWQQHYYW EHMDVTKIRF FKLMTGDFAR GISIPVKFGK  60
NFNGNISKEF NLKAPNGETW HIGVDKDADG LLFLKSGWED FVKAHKLQEN DLLIFTCSGN  120
SSFKVLIFEA SGCEKVSFQF AKKTSPSMLK NSVAKPNWLH HDEHCSLSDS EDTTTPSQLV  180
GSPQDATTSK NCKRTVTDVL FPWMLSESPN SSNYHVKREA IDEPCSTCSN GNYYYSRIAD  240
RLSDEEKEEV LTLSSIRSDN PAFFTVLQMS HVRRRNNFLI FPSRFAADHL DNRLHEIILC  300
RPNRKDKWCV KYKRGRDTQG IRNYNFFKFV RENKLREGDI CAFELMKGAK RVTMTVHAIR  360
KVDDRFTLVG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913654
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808342.11e-167B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-128Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP11e-168A0A2T7EIP1_9POAL; Uncharacterized protein
STRINGSi022505m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-32B3 family protein