PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 423aa MW: 48360.2 Da PI: 9.691 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.3 | 2.4e-17 | 105 | 186 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++ +++p kf ++ +gk +k+ l+ +s+++W+v l +k+ g++++ +GW +F+kan+L+e+Df++F+ +g+ f v++f++ 462913648 105 FAQS-ISIPEKFGNSLKGKV--NKEFNLKAPSSETWRVSL--TKHAGEMFFMSGWGDFAKANELQENDFLIFTISGNYAF--DVMIFDA 186 4443.8*******9997774..568***************..*******************************9998888..8888886 PP | |||||||
2 | B3 | 44.8 | 2.3e-14 | 322 | 414 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++++ +k+++l++p +fa++h ++ +s ++ l + +W v++ + + +++ + W +Fv++ngL+ +++F+l++ +++++vv+v+rk 462913648 322 KTHMGHKNNLLIIPGDFAADHL-ET-RSHDILLLRpNRKDKWCVNYYHGRATRGFSCR-RWIKFVQDNGLRKDFICIFELVKGaKRTTMVVHVVRK 414 45677788999*******9994.33.44455555527779******555555556555.9********************9887*********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-21 | 91 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.747 | 94 | 187 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.27E-16 | 96 | 185 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-20 | 97 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.8E-13 | 97 | 187 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 106 | 186 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-16 | 308 | 413 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-16 | 309 | 413 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-13 | 314 | 413 | No hit | No description |
Pfam | PF02362 | 1.1E-12 | 316 | 414 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-11 | 316 | 415 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.814 | 317 | 415 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDDPSFAHVM PKHQIHRSSV SCGKERCRVI RRIGAPRAAV APPRQRPQRP SSIIANPPWC 60 FCRRPSPWKM AQQGCESCQK WQDHYYQEHM DVSGIRFFKL LTGDFAQSIS IPEKFGNSLK 120 GKVNKEFNLK APSSETWRVS LTKHAGEMFF MSGWGDFAKA NELQENDFLI FTISGNYAFD 180 VMIFDASGCE KVSSFFKGKR DPCMHKHFQN IVGQQAEHCN LSDSNDTSTP LPLIESAYKA 240 SASKKMRGKT KPREEPESPD SSNHHIKREG MGDEEQSDDR HADSIYYYSR SARILTGNER 300 EEILSLASIQ PGNPVFMTVL QKTHMGHKNN LLIIPGDFAA DHLETRSHDI LLLRPNRKDK 360 WCVNYYHGRA TRGFSCRRWI KFVQDNGLRK DFICIFELVK GAKRTTMVVH VVRKVNGRFI 420 MAG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913648 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808341.1 | 1e-176 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 1e-146 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A0A9E2X8 | 0.0 | A0A0A9E2X8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ca02695.1.p | 1e-177 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-32 | B3 family protein |