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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14357 Da PI: 7.5807 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 1e-15 | 44 | 123 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkv+ +++ +++p kfa+++ g+ s ++le ++g+ ++v + +k +++ +l++GW F +a +Lk+gD +vF+++g+ 462913645 44 FFKVM--VGDFQQ-EMTVPEKFANNFRGQ--ISEIVKLEAPDGNMYNVHV--SKDQNKLILKSGWGTFSSAYELKQGDLLVFRYTGD 123 56666..444555.59*******888777..6778***************..9******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.51E-19 | 37 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-19 | 38 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.885 | 41 | 124 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.00E-17 | 42 | 124 | No hit | No description |
SMART | SM01019 | 0.0055 | 44 | 124 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-14 | 44 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MASRDHEYDG GSGHKISSGS CCRRCRHCYE HNYWDHLDNR QKHFFKVMVG DFQQEMTVPE 60 KFANNFRGQI SEIVKLEAPD GNMYNVHVSK DQNKLILKSG WGTFSSAYEL KQGDLLVFRY 120 TGDS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913645 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014758592.1 | 1e-47 | B3 domain-containing protein Os12g0591400 isoform X2 | ||||
Swissprot | Q2QMT6 | 1e-32 | Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080 | ||||
TrEMBL | A0A2T7EIN7 | 9e-54 | A0A2T7EIN7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02537.1.p | 7e-58 | (Panicum virgatum) | ||||
STRING | Pavir.Fa02304.1.p | 1e-58 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-15 | B3 family protein |