PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21202.2 Da PI: 9.5406 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 230.3 | 4.7e-71 | 5 | 162 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl. 101 + ++e+vCyv+CnfCntilavsvP + ++++vtvrCGhC+sllsvnl+ q l++++h l+e kv++ ++++n +++ + ++ +++++ 462913621 5 IAPAPEHVCYVHCNFCNTILAVSVPGNNMLNIVTVRCGHCASLLSVNLRGLIQSLSVQNH--------LQESFKVHNISFTENCSEYAPSPSKYRTQTMf 96 67899******************************************************9........56667788888888888887766666665555 PP YABBY 102 .senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++++ + +r Pekrqr+Psaynrfikeei+rikasnPdishreafs+aaknWahfP+ihfgl 462913621 97 pTKHYQDHMLH----VRAPEKRQRIPSAYNRFIKEEIRRIKASNPDISHREAFSTAAKNWAHFPNIHFGL 162 55566667776....899**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.9E-70 | 9 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.37E-8 | 106 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.2E-5 | 108 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSLQIAPAPE HVCYVHCNFC NTILAVSVPG NNMLNIVTVR CGHCASLLSV NLRGLIQSLS 60 VQNHLQESFK VHNISFTENC SEYAPSPSKY RTQTMFPTKH YQDHMLHVRA PEKRQRIPSA 120 YNRFIKEEIR RIKASNPDIS HREAFSTAAK NWAHFPNIHF GLGPHESSKK LDEAIGAAGR 180 PQKVQGLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913621 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795820.1 | 1e-116 | protein YABBY 2-like isoform X4 | ||||
Swissprot | Q10FZ7 | 1e-103 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2T7C330 | 1e-117 | A0A2T7C330_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01130.1.p | 1e-110 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-56 | YABBY family protein |