PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911600
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 383aa    MW: 42331.1 Da    PI: 9.1731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911600genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-06313335223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+C+k F+++ +L+ H  + H
  462911600 313 VCPKCHKAFRDPVLLVEHVERdH 335
                7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.4E-1357102No hitNo description
Gene3DG3DSA:4.10.1110.105.8E-1161103IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.60762108IPR000058Zinc finger, AN1-type
SMARTSM001540.003165104IPR000058Zinc finger, AN1-type
PfamPF014283.4E-1365102IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.6E-10143209IPR000058Zinc finger, AN1-type
SuperFamilySSF1183105.49E-9145197No hitNo description
PROSITE profilePS510397.786150197IPR000058Zinc finger, AN1-type
SMARTSM001540.073153194IPR000058Zinc finger, AN1-type
PfamPF014285.2E-8153192IPR000058Zinc finger, AN1-type
SMARTSM003550.071275298IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
SMARTSM003557312335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663312340IPR007087Zinc finger, C2H2
PROSITE patternPS000280314335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
LTTEPPLPVC FLPPSSLSAG ARGGQGNISR PPKRRRPKAV RVSSKGAAVR SGMGTPEFPN  60
LGQHCSVGDC RQIDFLPFTC DRCDHVFCLQ HRSYISHQCP NANVKDVTVL VCPLCAKGVR  120
LNPNEDPNIT WDSHVNTDCD PSNYQKVTKK KKCPVPGCRE TLTFSNTIRC KDCTKEHCLK  180
HRFGPDHKCP GPRKMDSSFS FSNMLRKSQK AETRSNSSKN TSSWWSSSLL SAASNFRTSA  240
EAGMQKLSTA TSQAFQKAKD GISPDSSSSS GDLVEQCIHC PARFSTVGAL IEHVEKSHQM  300
SSQSSRGRVT VDVCPKCHKA FRDPVLLVEH VERDHGGNAD RYLCKKLQVV RIWSCYPAIQ  360
NSQIHVSANV YQSFYGDCKQ RIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wys_A3e-1246104156RIKEN cDNA 2310008M20 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911600
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412060.0BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460884.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-167SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6DXR31e-179A0A3L6DXR3_MAIZE; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLB4FVR81e-179B4FVR8_MAIZE; AN1-type zinc finger protein 2B
STRINGPavir.J03938.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]