PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462911248

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 429aa MW: 45979.9 Da PI: 8.7774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462911248	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	197	220	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dC+++F ++L+ H t H 462911248 197 FPCTDCDEVFAKAESLELHRATrH 220 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.452	197	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	199	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.64E-15	223	428	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.9E-8	233	427	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MPCPPMDAVK KQGKGAAKEM SRRDGKKKPS RSSWMAMGLY YPSSSSSSVK SRGQPAMASA 60 EAKNIDDEKS NSKKKRSISI SRSMTCAGSI CSTKESSVMS RGAGDAARSA SSRSLRAPTD 120 DAASAAAISA TSSFNSDTTA ATTVTSSSSP LWSALSSPLS SFGASSFRDV HQIRKLSGCY 180 ECHSVFHPKN LAAAAAFPCT DCDEVFAKAE SLELHRATRH AVSELGPLDT SRNIVEIIFQ 240 SSWLRKQAPV CKIERILKVQ SSDRTVKRFE QYKESIKEKA SNGEGKKNPR CVADGNELLR 300 FYCTTFTCAL GAGGGTALCQ APSTQCKLCG IIRDGFRVDG EGRIATMATS GRAHDMAQEQ 360 SDSGEKRAML VCRVVAGRVK RDADTKSSED SDCDSVSPCS EGVYSDLDEL FVLNPRAILP 420 CFVVIYSGY

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MPCPPMDAVK KQGKGAAKEM SRRDGKKKPS RSSWMAMGLY YPSSSSSSVK SRGQPAMASA  60
EAKNIDDEKS NSKKKRSISI SRSMTCAGSI CSTKESSVMS RGAGDAARSA SSRSLRAPTD  120
DAASAAAISA TSSFNSDTTA ATTVTSSSSP LWSALSSPLS SFGASSFRDV HQIRKLSGCY  180
ECHSVFHPKN LAAAAAFPCT DCDEVFAKAE SLELHRATRH AVSELGPLDT SRNIVEIIFQ  240
SSWLRKQAPV CKIERILKVQ SSDRTVKRFE QYKESIKEKA SNGEGKKNPR CVADGNELLR  300
FYCTTFTCAL GAGGGTALCQ APSTQCKLCG IIRDGFRVDG EGRIATMATS GRAHDMAQEQ  360
SDSGEKRAML VCRVVAGRVK RDADTKSSED SDCDSVSPCS EGVYSDLDEL FVLNPRAILP  420
CFVVIYSGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462911248

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828324.1	0.0	uncharacterized protein LOC112903299
TrEMBL	A0A3L6PI09	0.0	A0A3L6PI09_PANMI; Uncharacterized protein
STRING	Sb05g004260.1	1e-179	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	5e-68	C2H2-like zinc finger protein