PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462910242
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 268aa    MW: 29607.6 Da    PI: 11.0184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462910242genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19198248256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  462910242 198 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 248
                59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.62E-33197257No hitNo description
SMARTSM003805.9E-39198261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32198256IPR001471AP2/ERF domain
PROSITE profilePS5103222.998198255IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-23198256IPR016177DNA-binding domain
PfamPF008471.2E-12199248IPR001471AP2/ERF domain
PRINTSPR003673.4E-11199210IPR001471AP2/ERF domain
PRINTSPR003673.4E-11221237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDAADRGGCG GGRGRRWKGK GVSERPHHLA PVLEDAPAAA MLRPHKKIRS PDRLHRSLSS  60
LSSAPTSPDS SSVSNPLSPP ATSWPPTRHI FPFAYDPATA ASSEAATPRV LPLLQYPSLY  120
QQQPLQMISF GGSSSPQQQE HQFGAAASPA LFPPHLVAPE VQQQMLLRYW SEALNLSPRG  180
FRGGAFPPDS PPPRPQKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEDAAMAYDR  240
EAFKLRGENA RLNFPDLFLG KGKNKSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20197255463ATERF1
3gcc_A2e-20197255463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462910242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276742e-81KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809849.11e-100ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2S3GRD66e-99A0A2S3GRD6_9POAL; Uncharacterized protein
STRINGSi019997m7e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-38ERF family protein