PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462910242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 29607.6 Da PI: 11.0184 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.1e-19 | 198 | 248 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge 462910242 198 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 248 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.62E-33 | 197 | 257 | No hit | No description |
SMART | SM00380 | 5.9E-39 | 198 | 261 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 198 | 256 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 198 | 255 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-23 | 198 | 256 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-12 | 199 | 248 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 199 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 221 | 237 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MDAADRGGCG GGRGRRWKGK GVSERPHHLA PVLEDAPAAA MLRPHKKIRS PDRLHRSLSS 60 LSSAPTSPDS SSVSNPLSPP ATSWPPTRHI FPFAYDPATA ASSEAATPRV LPLLQYPSLY 120 QQQPLQMISF GGSSSPQQQE HQFGAAASPA LFPPHLVAPE VQQQMLLRYW SEALNLSPRG 180 FRGGAFPPDS PPPRPQKLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEDAAMAYDR 240 EAFKLRGENA RLNFPDLFLG KGKNKSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 197 | 255 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 197 | 255 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462910242 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727674 | 2e-81 | KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809849.1 | 1e-100 | ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A2S3GRD6 | 6e-99 | A0A2S3GRD6_9POAL; Uncharacterized protein | ||||
STRING | Si019997m | 7e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-38 | ERF family protein |