PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 325aa MW: 35999.9 Da PI: 8.989

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462908761	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.6	6.6e-11	18	44	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +CkF+H+p 462908761 18 PGEADCIYYLRTGLCRFGMTCKFNHPP 44 57899********************97 PP
2	zf-CCCH	39.4	1e-12	65	89	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtGtCk+G+ CkF+H++ 462908761 65 QPECQYYLRTGTCKFGAACKFHHPR 89 799********************96 PP
3	zf-CCCH	26.7	9.3e-09	111	135	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+ +CkF+H++ 462908761 111 EKECAYYVRTGQCKFAKTCKFHHPE 135 679********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-4	17	44	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.563	17	45	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-8	19	44	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	21	45	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-4	23	43	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.535	62	90	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-5	62	89	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-10	65	89	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-6	66	91	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-5	68	90	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-6	108	136	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.9E-4	108	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.742	108	136	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-6	111	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.695	223	251	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.77	224	250	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.55E-5	226	252	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MTLGGGESME SGPYPERPGE ADCIYYLRTG LCRFGMTCKF NHPPNRNLIV AAERIKGDYP 60 HRAGQPECQY YLRTGTCKFG AACKFHHPRE KAAVTTHVQL NVLGYPLRPN EKECAYYVRT 120 GQCKFAKTCK FHHPEPSNTV AAVHGHIYSP GQSATSPGQH TYPGVVTDPE VSRSTSFIAN 180 PPWPGHSVYP HVGQGLVQAH GWNPYAWNIM RYMAQFQLNI MRYKGKPICT YYCCYGKCKF 240 GPNCKFDHPI GSLYGTATSP TGDAPMRYGQ LAPSPGESER LLDGGSGMSH RISQSDSSKY 300 PPAMKVLKER GIMNALQSFH TASHP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462908761

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810066.1	1e-136	zinc finger CCCH domain-containing protein 66
Swissprot	Q2QT65	1e-131	C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBL	A0A3L6REA4	1e-136	A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRING	OPUNC12G08520.3	1e-133	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	4e-78	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]