PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462908312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24152.5 Da PI: 8.7666 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.4 | 6.6e-16 | 17 | 56 | 1 | 40 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGas 40 +CaaCk +rrkCa+dC+lapyfpa++p+++a+v+++FG + 462908312 17 RCAACKNQRRKCAQDCILAPYFPASDPQRYACVKRIFGSR 56 6*************************************86 PP | |||||||
2 | DUF260 | 118.2 | 4.8e-37 | 62 | 162 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk +rrkCa+dC+lapyfpa++p+++a+v+++FGasn+ +++++lp ++r +a+++++ eA+ r++dPvyG++gvi +lq +++ +++ela+++++ 462908312 62 RCAACKNQRRKCAQDCILAPYFPASDPQRYACVKRIFGASNIARMIQSLPVHDRGKAADTMATEAHRRVQDPVYGCAGVIARLQDEIRAVQSELARTEAQ 161 6**********************************************************************************************99987 PP DUF260 101 l 101 + 462908312 162 I 162 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.3E-13 | 17 | 56 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 23.754 | 61 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-36 | 62 | 159 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSTSANTGAV AANPGRRCAA CKNQRRKCAQ DCILAPYFPA SDPQRYACVK RIFGSRSRQP 60 GRCAACKNQR RKCAQDCILA PYFPASDPQR YACVKRIFGA SNIARMIQSL PVHDRGKAAD 120 TMATEAHRRV QDPVYGCAGV IARLQDEIRA VQSELARTEA QIAVHAAAAA GAQPAAGNQL 180 NAQLVQGPMQ QQGDALMVQE PFPALDALLN DVHAGANLFD DDMGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-31 | 63 | 176 | 12 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-31 | 63 | 176 | 12 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462908312 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806770.1 | 1e-66 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-38 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2S3HD56 | 3e-65 | A0A2S3HD56_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6TJP8 | 2e-65 | A0A3L6TJP8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J09684.1.p | 7e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-37 | LOB domain-containing protein 24 |