PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462908070

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 1203aa MW: 130759 Da PI: 5.7279

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462908070	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.6	2.9e-20	102	158	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ 462908070 102 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 158 688999************************************************995 PP
2	START	206.9	8e-65	292	512	2	206
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 la a++el+++a++++p+W e +n+de+ + f+++ + ++ea+r+s+vv+m++a+lve+l+d++ q+ + + +a+tlev+s+ 462908070 292 LAVVAMEELLRMAQVDAPLWNAPGidgsgETLNEDEYARMFPRGIGpkqyeLKSEASRDSAVVIMTHANLVEILMDVN-QYATVFSnivsRAATLEVLST 390 66779*************998899999**********999****************************.76666666666****** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180 g galq+m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ + v +++++pSg+li++++ng+skvtwvehv++++r++h++ 462908070 391 GvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSS----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNI 486 **************************************************965....8********************************** PP HHHHHHHHHHHHHHHHHHHTXXXXXX CS START 181 lrslvksglaegaktwvatlqrqcek 206 +r lv+sgla+ga++wv tl+rqce+ 462908070 487 YRLLVNSGLAFGARRWVGTLDRQCER 512 **********************97 PP
3	START	208.5	2.6e-65	687	908	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela +a++el+++a++++p+W e +n++e+ + f+++ + ++ea+r+s+vv+m++a+lve+l+d++ q+ + + +a+tlev+s 462908070 687 ELAVAAMEELLRMAQVDAPLWNAPGidgsgETLNEEEYARMFPRGIGpkqyeLKSEASRDSAVVIMTHANLVEILMDVN-QYATVFSnivsRAATLEVLS 785 57899**************998899999**********999****************************.76666666666***** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +g galq+m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ + v +++++pSg+li++++ng+skvtwvehv++++r++h+ 462908070 786 TGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSS----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHN 881 ***************************************************965....8********************************* PP HHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 180 llrslvksglaegaktwvatlqrqcek 206 ++r lv+sgla+ga++wv tl+rqce+ 462908070 882 IYRLLVNSGLAFGARRWVGTLDRQCER 908 ***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-19	86	159	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.4E-23	88	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	99	159	IPR001356	Homeobox domain
SMART	SM00389	1.1E-19	100	163	IPR001356	Homeobox domain
CDD	cd00086	2.95E-19	102	160	No hit	No description
Pfam	PF00046	7.2E-18	102	157	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	134	157	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.241	282	515	IPR002913	START domain
SuperFamily	SSF55961	2.06E-35	283	514	No hit	No description
CDD	cd08875	5.70E-120	286	511	No hit	No description
SMART	SM00234	6.0E-61	291	512	IPR002913	START domain
Pfam	PF01852	4.4E-54	293	512	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.6E-6	352	510	IPR023393	START-like domain
SuperFamily	SSF55961	3.66E-8	533	672	No hit	No description
PROSITE profile	PS50848	40.335	678	911	IPR002913	START domain
SuperFamily	SSF55961	8.93E-36	680	910	No hit	No description
CDD	cd08875	2.94E-119	682	907	No hit	No description
SMART	SM00234	9.3E-62	687	908	IPR002913	START domain
Pfam	PF01852	1.6E-54	688	908	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.1E-6	748	906	IPR023393	START-like domain
SuperFamily	SSF55961	3.3E-18	929	1018	No hit	No description
SuperFamily	SSF55961	3.3E-18	1056	1192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1203 aa Download sequence Send to blast
MMIPVRHMPS MIGRNGVAAY GSSSALSLGQ PNLLDNQQLQ QALQQQHLLD QIPATTAESG 60 DNMMRSRGSD PLGDEFDSKS GSENVDGVSV DDQDPNQRPN KKKRYHRHTQ HQIQEMEAFF 120 KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERQENSQLRA ENEKLRAENI 180 RYREALSSAS CPNCGGPAAL GEMSFDEHHL RVENARLRDE IDRISAIAAK YVGKPMVSFP 240 VLSSPLAAAR AGVASPLDLG AGAGDIFSGG AGELLRGAAA QSDADKPMIV ELAVVAMEEL 300 LRMAQVDAPL WNAPGIDGSG ETLNEDEYAR MFPRGIGPKQ YELKSEASRD SAVVIMTHAN 360 LVEILMDVNQ YATVFSNIVS RAATLEVLST GVAGNYNGAL QVMSVEFQVP SPLVPTRESY 420 FVRYCKQNSD GTWAVVDVSL DSLRPSSVLK CRRRPSGCLI QEMPNGYSKV TWVEHVEVDD 480 RSVHNIYRLL VNSGLAFGAR RWVGTLDRQC ERLASVMASN IPTSDIGVIT SSEGRKSMLK 540 LAERMVMSFC GGVTASAAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP 600 VPPKRWDILS NGGVVQEMAH IANGRDHGNC VSLLRVNSTN SNQSNMLILQ ESCTDSSGSY 660 VIYAPVDVVA MNVVLNGGDP DYPMIVELAV AAMEELLRMA QVDAPLWNAP GIDGSGETLN 720 EEEYARMFPR GIGPKQYELK SEASRDSAVV IMTHANLVEI LMDVNQYATV FSNIVSRAAT 780 LEVLSTGVAG NYNGALQVMS VEFQVPSPLV PTRESYFVRY CKQNSDGTWA VVDVSLDSLR 840 PSSVLKCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRSVH NIYRLLVNSG LAFGARRWVG 900 TLDRQCERLA SVMASNIPTS DIGVITSSEG RKSMLKLAER MVMSFCGGVT ASAAHQWTTL 960 SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPVPPK RVFDFLRDES SRSEACISLH 1020 PYDQTHQLFI HTNTKKFINT SCLISQWDIL SNGGVVQEMA HIANGRDHGN CVSLLRVNST 1080 NSNQSNMLIL QESCTDSSGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAG 1140 GSMQGDGGVG TGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVDR IKAAVSGESN 1200 NPQ

Sequence ? help Back to Top

Protein Sequence Length: 1203 aa Download sequence Send to blast

MMIPVRHMPS MIGRNGVAAY GSSSALSLGQ PNLLDNQQLQ QALQQQHLLD QIPATTAESG  60
DNMMRSRGSD PLGDEFDSKS GSENVDGVSV DDQDPNQRPN KKKRYHRHTQ HQIQEMEAFF  120
KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERQENSQLRA ENEKLRAENI  180
RYREALSSAS CPNCGGPAAL GEMSFDEHHL RVENARLRDE IDRISAIAAK YVGKPMVSFP  240
VLSSPLAAAR AGVASPLDLG AGAGDIFSGG AGELLRGAAA QSDADKPMIV ELAVVAMEEL  300
LRMAQVDAPL WNAPGIDGSG ETLNEDEYAR MFPRGIGPKQ YELKSEASRD SAVVIMTHAN  360
LVEILMDVNQ YATVFSNIVS RAATLEVLST GVAGNYNGAL QVMSVEFQVP SPLVPTRESY  420
FVRYCKQNSD GTWAVVDVSL DSLRPSSVLK CRRRPSGCLI QEMPNGYSKV TWVEHVEVDD  480
RSVHNIYRLL VNSGLAFGAR RWVGTLDRQC ERLASVMASN IPTSDIGVIT SSEGRKSMLK  540
LAERMVMSFC GGVTASAAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP  600
VPPKRWDILS NGGVVQEMAH IANGRDHGNC VSLLRVNSTN SNQSNMLILQ ESCTDSSGSY  660
VIYAPVDVVA MNVVLNGGDP DYPMIVELAV AAMEELLRMA QVDAPLWNAP GIDGSGETLN  720
EEEYARMFPR GIGPKQYELK SEASRDSAVV IMTHANLVEI LMDVNQYATV FSNIVSRAAT  780
LEVLSTGVAG NYNGALQVMS VEFQVPSPLV PTRESYFVRY CKQNSDGTWA VVDVSLDSLR  840
PSSVLKCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRSVH NIYRLLVNSG LAFGARRWVG  900
TLDRQCERLA SVMASNIPTS DIGVITSSEG RKSMLKLAER MVMSFCGGVT ASAAHQWTTL  960
SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPVPPK RVFDFLRDES SRSEACISLH  1020
PYDQTHQLFI HTNTKKFINT SCLISQWDIL SNGGVVQEMA HIANGRDHGN CVSLLRVNST  1080
NSNQSNMLIL QESCTDSSGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAG  1140
GSMQGDGGVG TGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVDR IKAAVSGESN  1200
NPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462908070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB101645	0.0	AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976894.1	0.0	homeobox-leucine zipper protein ROC2
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A1E5WHW1	0.0	A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2
STRING	Si009409m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]