PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907201
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 301aa    MW: 32590.1 Da    PI: 6.5579
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907201genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.31.1e-26107168159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+++r++edp++++++Y+g+H+++
  462907201 107 VDDGHSWRKYGQKEILGAKHPRGYYRCTHKhsqGCTATKQMQRTDEDPTLFDVIYHGTHTCQ 168
                59***************************98999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-27101169IPR003657WRKY domain
PROSITE profilePS5081121.264102165IPR003657WRKY domain
SuperFamilySSF1182901.57E-24105169IPR003657WRKY domain
SMARTSM007742.7E-37107169IPR003657WRKY domain
PfamPF031061.4E-25108168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDSLDGNGGS RLVVTELSHI KDLVMQLETH LGGSNDLCKH LTSQIFCLTE RSIGIITSFD  60
GRRRPRLGDA QPPQRRCRRA VQDHQKEVTE KKNQVRVSSG AGGETPVDDG HSWRKYGQKE  120
ILGAKHPRGY YRCTHKHSQG CTATKQMQRT DEDPTLFDVI YHGTHTCQKT AAGQAKQQLP  180
SHNPDAHSLL QSLSATLTVK TEGLAAAAGA PSTFCFSSTP ASECLAPEHS PFSAPSSANW  240
GVSPATSDSN YAASFPFLDA AAAGDDEFRA QSEHHEVVSA LVAASGPAID IDEFLNMEFF  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22107168869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907201
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586251e-63KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-103probable WRKY transcription factor 30
TrEMBLA0A1D8F0I21e-105A0A1D8F0I2_9POAL; WRKY74-1 protein
STRINGSi030528m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-34WRKY family protein