PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907198
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 301aa    MW: 32831.7 Da    PI: 7.9186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907198genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.53e-24117177158
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                +dDg++WrKYGqK++ g+++ rsYYrC ++   gC++ kkv+r+++dp +++++Y g+H++
  462907198 117 VDDGHSWRKYGQKPILGAKYRRSYYRCRHRhtqGCTAMKKVQRADDDPAFFDVVYYGTHTC 177
                59**************************988889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-25108178IPR003657WRKY domain
PROSITE profilePS5081120.449112175IPR003657WRKY domain
SuperFamilySSF1182905.62E-23115177IPR003657WRKY domain
SMARTSM007746.7E-34117179IPR003657WRKY domain
PfamPF031061.7E-24118177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MESVHGSGGS RLVVSELSHI KDLVLQLETH LNGSHDLCRH LVSQIFSLTE RSIGIITSSN  60
FDNGRKLSWR GAGLASATPS PLGNNVADVP FRSNKKRTTM RKRQVRMNST EGGEAPVDDG  120
HSWRKYGQKP ILGAKYRRSY YRCRHRHTQG CTAMKKVQRA DDDPAFFDVV YYGTHTCVET  180
TATGQAAQAP EHNPDSHSHL QSLAVKTEEI SAAPAPPQGW NATAPFYPTS TPVSWCPTPA  240
TSDLNHVTSF QPFDPPLLRA KSELQDVVSA LVATTSAPSV PAVDIACSEF VDIDTISSFF  300
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20117177868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.16e-97probable WRKY transcription factor 30
TrEMBLA0A2S3GYW51e-95A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p6e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-21WRKY family protein