PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907072
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 225aa    MW: 24279 Da    PI: 7.5469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907072genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44e-30109167159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+ edp++v++tY g Hnh 
  462907072 109 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDPEDPRYVVTTYDGVHNHA 167
                59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-3196169IPR003657WRKY domain
SuperFamilySSF1182901.11E-26101169IPR003657WRKY domain
PROSITE profilePS5081131.456104169IPR003657WRKY domain
SMARTSM007747.9E-34109168IPR003657WRKY domain
PfamPF031061.3E-23110166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAASLGLCHE TFAYPPAAAS SYCFPPDLVA TNFAAMADHY FPELGVHPPA GYYSPPQVFA  60
GENEQMNMSY ADHDGRWMSR SAASAVNGGA GGRASSRIGF RTRSAVDVLD DGFKWRKYGK  120
KAVKSSPNPR NYYRCSAEGC GVKKRVERDP EDPRYVVTTY DGVHNHAAPC CAAAGYYHHA  180
PPPYAATTTL LPAPAPCPDV WGVQQQQQQL HAAAATVTHS SESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2694169277Probable WRKY transcription factor 4
2lex_A3e-2694169277Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586132e-83KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.11e-61WRKY transcription factor WRKY24-like
TrEMBLA0A3L6SK852e-67A0A3L6SK85_PANMI; Putative WRKY transcription factor 58
STRINGSi002621m5e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-34WRKY DNA-binding protein 51