PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462906916

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 545aa MW: 59686 Da PI: 9.6606

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462906916	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.7e-10	49	91	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le +L + ++L+ 462906916 49 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 91 5899*************************86666666555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-8	46	109	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	48	92	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-7	50	91	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-7	50	93	No hit	No description
CDD	cd14708	2.49E-22	50	102	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-7	52	95	No hit	No description
PROSITE pattern	PS00036	0	53	68	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-32	132	207	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MADASSRTDT STVLDTDDKN QRLENGQSGA AMASNSSDRS DRSDRPMDQK VLRRLAQNRE 60 AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHAM SGNGAMTFDL 120 EYARWQEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFRQKGVA AKADVFHILS 180 GMWKTPAERC FLWLGGFRSS ELLKLLVNQL EPLTDQQMLG LSNLQQSSQQ AEDALSQGME 240 ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQMIRG SVLSVQVVLT 300 SSGHFSVVQV GRRGPPTSPP AHXXXXXXXX XXXLPSSRPS AADLRRGCAL AAAWATGSLD 360 RAAPMTPPPS IQSSGTTDLD VKATAPAKAA SCRYKRGGSL QIDPLPPAAL VSHLQFSKHR 420 FGGFLVQASM AGSGPGSSLC AWREPILRDR FEASLFGVLA PWVQKRSYID LATGSIHMIY 480 QSAYSQFRST GSRQDRMLGI SYAKSDFGVA IGIGCQMNRF TCLMEWDQPA IQYVVKFWKV 540 NMYLH

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MADASSRTDT STVLDTDDKN QRLENGQSGA AMASNSSDRS DRSDRPMDQK VLRRLAQNRE  60
AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHAM SGNGAMTFDL  120
EYARWQEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFRQKGVA AKADVFHILS  180
GMWKTPAERC FLWLGGFRSS ELLKLLVNQL EPLTDQQMLG LSNLQQSSQQ AEDALSQGME  240
ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQMIRG SVLSVQVVLT  300
SSGHFSVVQV GRRGPPTSPP AHXXXXXXXX XXXLPSSRPS AADLRRGCAL AAAWATGSLD  360
RAAPMTPPPS IQSSGTTDLD VKATAPAKAA SCRYKRGGSL QIDPLPPAAL VSHLQFSKHR  420
FGGFLVQASM AGSGPGSSLC AWREPILRDR FEASLFGVLA PWVQKRSYID LATGSIHMIY  480
QSAYSQFRST GSRQDRMLGI SYAKSDFGVA IGIGCQMNRF TCLMEWDQPA IQYVVKFWKV  540
NMYLH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462906916

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727805	0.0	KJ727805.1 Zea mays clone pUT5757 bZIP transcription factor (bZIP52) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558037.1	0.0	transcription factor TGA2.2 isoform X1
Swissprot	Q6IVC3	1e-173	TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBL	I1H628	0.0	I1H628_BRADI; Uncharacterized protein
STRING	BRADI1G64060.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-113	TGACG motif-binding factor 6

Publications ? help Back to Top
Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20 [PMID:15986920] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]