PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 539aa MW: 61720.3 Da PI: 4.7336

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462906604	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	66.8	3.9e-21	14	65	49	100
NF-YC 49 kacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 +ce+fi eltlr w ha+enkrrt++k+di+ a++rt++fdflvdi p d+ 462906604 14 PTCEMFIKELTLRGWHHAQENKRRTIRKNDISMALSRTEVFDFLVDISPPDK 65 58*********************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.14E-11	13	62	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.1E-14	15	60	IPR009072	Histone-fold
Pfam	PF00808	2.0E-6	15	48	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF81383	3.14E-8	180	239	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	3.5E-28	181	450	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF12937	9.8E-6	187	231	IPR001810	F-box domain
SuperFamily	SSF52047	6.87E-16	270	359	No hit	No description
SuperFamily	SSF52047	6.87E-16	387	451	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MSKGLQVRHR WSSPTCEMFI KELTLRGWHH AQENKRRTIR KNDISMALSR TEVFDFLVDI 60 SPPDKLIGEF VGLPTTIAEQ PIAPLWKTTE PLPQLPLIKD ELMGAGIGLP KSKSMQYTVT 120 QRNASDPLLL TPPVTVDKVT PHLHLRKVEP DLEYMASSPK KTQDSQVPLC TMDVDPSPLE 180 DSPERDWSEL PLDVLSSIFI KLGSIEILMG AGLVCRSWLM SGKTPELWRF VDMTRHKLVF 240 SKGEDTMCAM AKVAIDRSDG KMESFWAQKF VTDELLDYIV DRANSLKSIR LIGCTYIWTE 300 ALARFASKCP LLEEIECSHH KMPAGLFRYI GKVCPQLKHL RIHMQWFDSD QIMREMAMES 360 RQNDEDEYEE PEESDEAWEA RQNQDAFAIA ESLHELRLLQ MQGNSLTNKG VYAILEGCPH 420 LEFLDISECY HIDVNAELRT CCAKLKHVWL PTRGNLRCPE LHVIGVNEGE DDGLTMHDLW 480 LAEAVSLRAE AEMDNDGSYG DNYWECDCSS PDEPWTHSRN MISDGPRFYS EIHDYDDDW

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MSKGLQVRHR WSSPTCEMFI KELTLRGWHH AQENKRRTIR KNDISMALSR TEVFDFLVDI  60
SPPDKLIGEF VGLPTTIAEQ PIAPLWKTTE PLPQLPLIKD ELMGAGIGLP KSKSMQYTVT  120
QRNASDPLLL TPPVTVDKVT PHLHLRKVEP DLEYMASSPK KTQDSQVPLC TMDVDPSPLE  180
DSPERDWSEL PLDVLSSIFI KLGSIEILMG AGLVCRSWLM SGKTPELWRF VDMTRHKLVF  240
SKGEDTMCAM AKVAIDRSDG KMESFWAQKF VTDELLDYIV DRANSLKSIR LIGCTYIWTE  300
ALARFASKCP LLEEIECSHH KMPAGLFRYI GKVCPQLKHL RIHMQWFDSD QIMREMAMES  360
RQNDEDEYEE PEESDEAWEA RQNQDAFAIA ESLHELRLLQ MQGNSLTNKG VYAILEGCPH  420
LEFLDISECY HIDVNAELRT CCAKLKHVWL PTRGNLRCPE LHVIGVNEGE DDGLTMHDLW  480
LAEAVSLRAE AEMDNDGSYG DNYWECDCSS PDEPWTHSRN MISDGPRFYS EIHDYDDDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-17	16	62	48	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462906604

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010234428.1	1e-143	F-box/LRR-repeat protein 17 isoform X1
Refseq	XP_010234429.1	1e-143	F-box/LRR-repeat protein 17 isoform X2
TrEMBL	A2YS23	1e-153	A2YS23_ORYSI; Uncharacterized protein
STRING	ORGLA08G0046900.1	1e-153	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP548	7	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-20	nuclear factor Y, subunit C2