PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462906199
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 307aa    MW: 33515.7 Da    PI: 6.5149
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462906199genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.6e-334397155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  462906199 43 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 97
               58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.19740100IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-324198IPR009057Homeodomain-like
SuperFamilySSF466893.23E-184297IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-264498IPR006447Myb domain, plants
PfamPF002494.2E-94596IPR001005SANT/Myb domain
PfamPF143795.1E-23130175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MYSTKPEASS GQTHTDSAAN QQQMMLAGNN NNGANNNANN AARQRLRWTN ELHERFVEAV  60
TQLGGPDRAT PKGVLRIMGV PGLTIYHVKS HLQKYRLAKY IPDSSTDGNK ADNKDPGDLL  120
AGLEGSSGLQ ISEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLQKII EEQQRLTGVK  180
SETPVAGASV TVSNEQFPDS ERTEPSTPAP TSESPTQGPS NGDNGGRNEA PKSPCHDDSL  240
SHHEPLTPDS SHQPGSPTAS PNHERAAKRQ RGSGTEFSEA DFSLPRHIFE SSSGPEFQQY  300
SMSYSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-2343100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2343100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2343100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2343100158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462906199
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956515.10.0myb family transcription factor PHL7
SwissprotQ9SJW01e-100PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLK3ZVG10.0K3ZVG1_SETIT; Uncharacterized protein
STRINGSi030592m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-71G2-like family protein