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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 462905084 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family | HSF | ||||||||
| Protein Properties | Length: 221aa MW: 25341.7 Da PI: 7.9757 | ||||||||
| Description | HSF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HSF_DNA-bind | 86.7 | 3.2e-27 | 12 | 82 | 2 | 72 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72
Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa +Lp++Fkh+nf+SFvRQLn+YgF+k++ +++++
462905084 12 FLTKTFDLVADPATDGVVSWGRAGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDRRRR 82
9***************************************************************9998764 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00415 | 3.3E-35 | 8 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| Gene3D | G3DSA:1.10.10.10 | 3.0E-29 | 8 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| SuperFamily | SSF46785 | 8.71E-26 | 10 | 79 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| PRINTS | PR00056 | 5.7E-19 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| Pfam | PF00447 | 1.9E-24 | 12 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| PRINTS | PR00056 | 5.7E-19 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| PROSITE pattern | PS00434 | 0 | 51 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| PRINTS | PR00056 | 5.7E-19 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 221 aa Download sequence Send to blast |
MEGLHEVGPP PFLTKTFDLV ADPATDGVVS WGRAGNSFIV WDPHVFAAVL LPRFFKHNNF 60 SSFVRQLNTY GFRKIDPDRR RRPPSYLPAS QQQQALGTYL EVGHFGGLDE EIDRLKRDKN 120 ILLAEVVKLR QEQQSTKADM QAMEERLQHA ESKQLQMMGF LARAMQNPDF FHQLLQHQDR 180 RRELEDAFSK KRRRPIDIVP FAAGAGAAAA ETRRQGEEEL D |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2ldu_A | 1e-21 | 10 | 75 | 18 | 83 | Heat shock factor protein 1 |
| 5hdg_A | 1e-21 | 10 | 75 | 8 | 73 | Heat shock factor protein 1 |
| 5hdn_A | 1e-21 | 10 | 75 | 8 | 73 | Heat shock factor protein 1 |
| 5hdn_B | 1e-21 | 10 | 75 | 8 | 73 | Heat shock factor protein 1 |
| 5hdn_C | 1e-21 | 10 | 75 | 8 | 73 | Heat shock factor protein 1 |
| 5hdn_D | 1e-21 | 10 | 75 | 8 | 73 | Heat shock factor protein 1 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 179 | 193 | RRRELEDAFSKKRRR |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 462905084 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP012611 | 8e-83 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004985605.1 | 1e-122 | heat stress transcription factor A-2d | ||||
| Swissprot | Q8H7Y6 | 1e-119 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
| TrEMBL | A0A1E5WLF6 | 1e-126 | A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d | ||||
| STRING | Si038907m | 1e-122 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP308 | 37 | 231 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G22830.1 | 1e-75 | heat shock transcription factor A6B | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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