PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904894
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 288aa    MW: 31808.6 Da    PI: 5.3958
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904894genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.4e-15501311098
                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++k++  ++p++f++++ gk   s t++le+++g  ++v++    + +++vl++GW+ F + ++++e+D+++F+++++s+f   v++f+
  462904894  50 NFKHN-TIVPNRFLKHFTGK--LSGTIKLESPNGCLYDVQV--MDRYDKMVLGQGWEAFIDVHHINENDSLLFRHIKESSF--EVSIFD 131
                55665.778*****888777..6779***************..55566789*************************99999..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.20940133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-1840134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1941135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.85E-1742131No hitNo description
SMARTSM010195.1E-843133IPR003340B3 DNA binding domain
PfamPF023621.2E-1249131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEWGALLGSR NASVPPSKWE KQAESLIDPD TSKILGVERK TRFSKRMTGN FKHNTIVPNR  60
FLKHFTGKLS GTIKLESPNG CLYDVQVMDR YDKMVLGQGW EAFIDVHHIN ENDSLLFRHI  120
KESSFEVSIF DPDDCEKMFS CAGIKDTQSV QERSVDSVDT SSSSLHDTTE SSGSEKSTGS  180
DKGRHGKTAS MAAISSSSDV SGTGNSSESE SFESDDLEIP TGTDYVISSR SCLSEAQKER  240
VIAFIHEIEP EVTVFVAILR KCHVQPPVPS VVCFTTLFCC VRATLTVY
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982421.13e-88B3 domain-containing protein Os03g0619600
RefseqXP_004982422.13e-88B3 domain-containing protein Os03g0619600
RefseqXP_012698169.13e-88B3 domain-containing protein Os03g0619600
RefseqXP_022685402.17e-91B3 domain-containing protein Os03g0620400
SwissprotQ6AV219e-73Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SHD88e-87A0A368SHD8_SETIT; Uncharacterized protein
TrEMBLK4A8R04e-87K4A8R0_SETIT; Uncharacterized protein
STRINGSi035266m6e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-11B3 family protein