PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904891
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 644aa    MW: 71588.6 Da    PI: 6.785
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904891genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88e-13549639397
                EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                 v+++ dv  s+ l + +++a ++    +++s+++t    +gr+W+ ++  + +s+r +l +GW+ Fv++n L++gD++++  + + +e +++v+++
  462904891 549 AVMSKRDVIGSCELEFGRRYAVANlP-GTRRSVEIT---CTGRTWKAQM--SVRSSRWFLCGGWSTFVRDNILRVGDICLIIPKMNgRELNMMVRII 639
                578999******************62.456888888...789*******..88888888999******************99776658888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-6166230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-5167230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-6294355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-5295355IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-6427490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-6427490IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-15539629IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-14540626IPR015300DNA-binding pseudobarrel domain
CDDcd100175.30E-17545639No hitNo description
SMARTSM010191.0E-4547642IPR003340B3 DNA binding domain
PfamPF023624.1E-11548639IPR003340B3 DNA binding domain
PROSITE profilePS508639.925586642IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MQNPECRCSA AHRYCLDKVV FDASLTDWLC YECLQERGEI TGSRSLEKIW ERTRDGRDEV  60
FSCAAIETSG HFIDTASSCR YGTTESSETS KRFTKCQKGS SCRHGKTVIM ASTSSSSEES  120
GDDTPYENES LESDHPQAPL GADYVLPRRS YLSEEQKDRV IAHIQEIKPD ITVFVAIMHR  180
THVQPPSASL GISAEYAAAH FPPKSTNVTL ERPGKSKKWH PSYYKHNGVH VPPESDAHGV  240
STGSMEDSGD DTPTENGSLE SDDFQAPPVA DCVLSLGSYL SEAQKDRVIA HIQEIRPDVT  300
VFVAIMHKTN VQPPCASLAI SAKYASAHFP HESTIVKLER PGKRKKWHPS YYKHKEPSTG  360
LNVPPENGAH GISTGSMEDS GDDTPSENGS LESDDFQAPR MAEYVLPLRS YLSEAQKDRV  420
IAHIQEIKPG ITVFVAIMQK THVQPPCASL AISAKYASAH FPHESTNVTL ERPGTSKKWH  480
PTYYKHKGVH VPPESDAHGI STGSMEKDCV DTSKPPYILS CKNNLSEPEK KIIEDKVQAI  540
QSEIPIYVAV MSKRDVIGSC ELEFGRRYAV ANLPGTRRSV EITCTGRTWK AQMSVRSSRW  600
FLCGGWSTFV RDNILRVGDI CLIIPKMNGR ELNMMVRIIY REDL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904891
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein