PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462904885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 99aa MW: 11414.4 Da PI: 11.078 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.5e-16 | 12 | 92 | 14 | 95 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 ++l l ++a++ +++ +++t++l+ + + W+ k+ +r +++r +l++GW++Fv++ngL+ gD+++++l+++ ++ ++ + 462904885 12 SMLELGSRYATAVHLPS-RGQTVVLKY-TRKIWKAKMVVRCGGRRQYLSGGWSKFVRDNGLRIGDICLLELKKNeRKLTMEAH 92 56677788888887775.555777665.88*******9999999999************************987566665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 6.2E-7 | 1 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.068 | 1 | 97 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.11E-18 | 1 | 96 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-17 | 2 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-16 | 2 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.4E-14 | 12 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MSKSSVGDPQ RSMLELGSRY ATAVHLPSRG QTVVLKYTRK IWKAKMVVRC GGRRQYLSGG 60 WSKFVRDNGL RIGDICLLEL KKNERKLTME AHIIFREQF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462904885 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797620.1 | 7e-36 | B3 domain-containing protein Os03g0619800-like isoform X3 | ||||
Swissprot | Q6AV22 | 1e-25 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A0A8ZPI9 | 7e-40 | A0A0A8ZPI9_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A0A9SJW4 | 2e-40 | A0A0A9SJW4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ib02115.1.p | 4e-35 | (Panicum virgatum) | ||||
STRING | Pavir.Ib02116.1.p | 2e-35 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-08 | B3 family protein |
Publications ? help Back to Top | |||
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