PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462904621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 177aa MW: 18765.7 Da PI: 6.6372 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 84.9 | 2.2e-26 | 20 | 143 | 5 | 116 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnvekeesasts 95 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl aa + ++ ++ ll+el + +l + +++ +++ +s 462904621 20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLCGLLLPPAAPPANQLNFGQSllsptsphgLLDELALQAPSLLMEQQAASANLSS 119 578*******************************************999965555554445555444455777787777777777766666555555444 PP YABBY 96 vssekl...senedeevprvppvi 116 +++ + +n +p +ppv 462904621 120 ITNRSYsscASNVPAAAPTMPPVK 143 444433222344444455555543 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.1E-27 | 21 | 159 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MMSSSSSSSA AFPLDHLAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL 60 LSVNLCGLLL PPAAPPANQL NFGQSLLSPT SPHGLLDELA LQAPSLLMEQ QAASANLSSI 120 TNRSYSSCAS NVPAAAPTMP PVKLPVQHEP ELQTKSVPSV NRRKYLVSFF LELFDLL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462904621 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 1e-126 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 1e-126 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155220.1 | 6e-75 | protein YABBY 4-like isoform X1 | ||||
Swissprot | A2X7Q3 | 2e-60 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 2e-60 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3B6QIL1 | 1e-73 | A0A3B6QIL1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453P643 | 1e-73 | A0A453P643_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453P657 | 9e-74 | A0A453P657_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_59DB06B9F.1 | 2e-74 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00180.1 | 1e-19 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|