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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462904549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 16551.2 Da PI: 4.7067 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49 | 1.5e-15 | 23 | 63 | 13 | 56 |
AP2 13 grWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 gr++AeIrd + r +r++lg+f+t+eeAa a++aa++kl+g+ 462904549 23 GRYAAEIRDpV-----RkARVWLGTFDTPEEAALAYDAAARKLRGP 63 9********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.215 | 8 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-21 | 20 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-17 | 22 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-22 | 23 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-9 | 23 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.69E-13 | 23 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MAPRRSTSPA GSSGERAAAS AGGRYAAEIR DPVRKARVWL GTFDTPEEAA LAYDAAARKL 60 RGPGAATNYP VSTAPASGGS DAVISEPSST TSSSSSSRGS LAVLAASVAP ALIQFLPLKS 120 EEEEQSESAS SSFFSSATND DKSAPAVSLG LDLNLTWPAQ VMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-13 | 23 | 73 | 15 | 66 | ATERF1 |
3gcc_A | 1e-13 | 23 | 73 | 15 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462904549 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 1e-37 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972568.1 | 6e-31 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | K3YJQ5 | 1e-29 | K3YJQ5_SETIT; Uncharacterized protein | ||||
STRING | Si014474m | 2e-30 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 5e-11 | ethylene response factor 7 |