PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462903914

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 1280aa MW: 136073 Da PI: 4.2852

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462903914	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	1260	1280	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+++G+C+ G++C++ H+ 462903914 1260 VCK-FHEGGYCRKGASCSYLHP 1280 688.*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.455	1255	1280	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding
GO:0046872	Molecular Function	metal ion binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1280 aa Download sequence Send to blast
MLSHSERVPV CSPQSAPSAS PDMCKIEEIM NQQGTLEADT SNASVNQSPE SKTFPISSPD 60 NQDIEREFPS PTPRPENKEP VVDNSGLTPA SPEKLANTHS PGSDPCKMEA IVNRQKLPGA 120 GTSNSSDNHY PQSSNKDLEG EYLSPIARSD NKEPAVDNSL PTLPATENLR MNSASDADTC 180 KMEVTVNQQK PLEMDALNAS LNQSSGSNIF PVSSTDNQGI ERACPTPTPG SGNKVPSLDN 240 SGSAAPENFT TATASASDAC KMEEILDKKT TLETDASNGS VAPLQSKVSV VTSPDNLDIE 300 RECPSPAHRS ENKEPLADDS VLMSAAPENA PTTASAFNGC KMEETLNKKT VFETDVSNCP 360 VSPSPQSKEF TASPDNKDIQ QQYSNPIPEN KEPVVDNTGL ILTSPENFTT KVPGDSKDAF 420 ASPKSDPPTG KLNATVSDFK GVEEIIQNEL YPVIAWSPSE SRTASSQHDG SCLSSTTNPS 480 FLDDHHSSIA SEKPKNCAPA TPIEDRGSSS PSGMLSHSER VPVCSPQSAP SASPDMCKIE 540 EIMNQQGTLE ADTSNASVNQ SPESKSFPIS SPDNQDIERE FPSPTPRPEN KEPVVDNSGL 600 TPASPEKLAN THSPGSDPCK MEAIVNRQKL PGAGTSNSSD NHYPQSSNKD LEGEYLSPIA 660 RSDNKEPAVD NSLPTLPATE NLRMNSASDA DTCKMEVTVN QQKPLEMDAL NASLNQSSGS 720 NIFRVSSTDN QGIERACPTP TPGSGNKVPS LDNSGSAAPE NFTTATASAS DACKMEEILD 780 KKTTLETDAS NGSVAPLQSK VSVVTSPDNL DIERECPSPA HRSENKEPLA DDSVLMSAAP 840 ENAPTTASAF NGCKMEETLN KKTVFETDVS NCPVSPSPQS KEFTASPDNK DIQQQYSNPI 900 PENKEPVVDN TGLILTSPEN FTTKVPGDSK DAFASPKSDP PTGKLNATLT DFKGVEEIIQ 960 NELYSESIVV TRENMVIDPS CGAESIDVSD VLESLMEQNG TAALEDLLAA SAEEEPQCSS 1020 PIVLSPWGEP SYYQGDAVDS TLWGVQDDSV NDMWSLLPPT PALQPSSADL GTEANETLHI 1080 NKVAASHGVI EFLQRGGTPA EENVNQALSG AATDWVLPEQ VKSTPNDVST HESTGIVGWQ 1140 PSADQRLSVV TALGTNQSLY LPGCEKAATS SKSSLEASRK QESTDSCVSS SGEAIGNITK 1200 GLNPPSVNAN RGRQQNHRRG RYSEISESWL LSSNNSRSRS DRFGNGGSSR STLNGQNRGV 1260 CKFHEGGYCR KGASCSYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1280 aa Download sequence Send to blast

MLSHSERVPV CSPQSAPSAS PDMCKIEEIM NQQGTLEADT SNASVNQSPE SKTFPISSPD  60
NQDIEREFPS PTPRPENKEP VVDNSGLTPA SPEKLANTHS PGSDPCKMEA IVNRQKLPGA  120
GTSNSSDNHY PQSSNKDLEG EYLSPIARSD NKEPAVDNSL PTLPATENLR MNSASDADTC  180
KMEVTVNQQK PLEMDALNAS LNQSSGSNIF PVSSTDNQGI ERACPTPTPG SGNKVPSLDN  240
SGSAAPENFT TATASASDAC KMEEILDKKT TLETDASNGS VAPLQSKVSV VTSPDNLDIE  300
RECPSPAHRS ENKEPLADDS VLMSAAPENA PTTASAFNGC KMEETLNKKT VFETDVSNCP  360
VSPSPQSKEF TASPDNKDIQ QQYSNPIPEN KEPVVDNTGL ILTSPENFTT KVPGDSKDAF  420
ASPKSDPPTG KLNATVSDFK GVEEIIQNEL YPVIAWSPSE SRTASSQHDG SCLSSTTNPS  480
FLDDHHSSIA SEKPKNCAPA TPIEDRGSSS PSGMLSHSER VPVCSPQSAP SASPDMCKIE  540
EIMNQQGTLE ADTSNASVNQ SPESKSFPIS SPDNQDIERE FPSPTPRPEN KEPVVDNSGL  600
TPASPEKLAN THSPGSDPCK MEAIVNRQKL PGAGTSNSSD NHYPQSSNKD LEGEYLSPIA  660
RSDNKEPAVD NSLPTLPATE NLRMNSASDA DTCKMEVTVN QQKPLEMDAL NASLNQSSGS  720
NIFRVSSTDN QGIERACPTP TPGSGNKVPS LDNSGSAAPE NFTTATASAS DACKMEEILD  780
KKTTLETDAS NGSVAPLQSK VSVVTSPDNL DIERECPSPA HRSENKEPLA DDSVLMSAAP  840
ENAPTTASAF NGCKMEETLN KKTVFETDVS NCPVSPSPQS KEFTASPDNK DIQQQYSNPI  900
PENKEPVVDN TGLILTSPEN FTTKVPGDSK DAFASPKSDP PTGKLNATLT DFKGVEEIIQ  960
NELYSESIVV TRENMVIDPS CGAESIDVSD VLESLMEQNG TAALEDLLAA SAEEEPQCSS  1020
PIVLSPWGEP SYYQGDAVDS TLWGVQDDSV NDMWSLLPPT PALQPSSADL GTEANETLHI  1080
NKVAASHGVI EFLQRGGTPA EENVNQALSG AATDWVLPEQ VKSTPNDVST HESTGIVGWQ  1140
PSADQRLSVV TALGTNQSLY LPGCEKAATS SKSSLEASRK QESTDSCVSS SGEAIGNITK  1200
GLNPPSVNAN RGRQQNHRRG RYSEISESWL LSSNNSRSRS DRFGNGGSSR STLNGQNRGV  1260
CKFHEGGYCR KGASCSYLHP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462903914

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0A9CM59	0.0	A0A0A9CM59_ARUDO; Uncharacterized protein
STRING	GRMZM2G393471_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2709	18	22