PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462903912

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 1172aa MW: 125704 Da PI: 4.8651

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462903912	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.6e-06	1152	1172	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+++G+C+ G++C++ H+ 462903912 1152 VCK-FHEGGYCRKGASCSYLHP 1172 688.*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55277	1.22E-15	90	150	IPR003169	GYF domain
PROSITE profile	PS50829	14.231	95	147	IPR003169	GYF domain
SMART	SM00444	9.8E-13	96	149	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	1.3E-15	97	151	IPR003169	GYF domain
Pfam	PF02213	3.3E-10	98	137	IPR003169	GYF domain
PROSITE profile	PS50103	12.455	1147	1172	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1172 aa Download sequence Send to blast
MFGTNLSRIR ADTTKSRRKS KYRNSMQNHT QKIDDANHHP KNLSTESTIR GSKTGRKLEN 60 FHPTNGTDIP KPSTVYEAGS LSSSVLTVSS ETEPEKVWHY KDPSGNVQGP FTLLQLSKWT 120 TYFPRDLRVW LTFESEERSL LLTEVLSKQQ TVFTQTASVS TSIKATSAGI ELNINSPNVD 180 QKNALSPSGY SMLNSSVITG QTNKYSVPER GSVNSPDDCL SLSTPSVPPK DVQTLNSQVQ 240 FQTKHSVSVH SPGSPYGQTD LQQDGVQGGC SGESNHRHSS GALRSSVPAQ MNYSGNSNVA 300 SHHHNQRTLW LQSQHDPRNS SQGVSVKDLS NNLPTQRVGK DVPNPVIAWS PSESRTASSQ 360 HDGSCLSSTT NPSFLDDHHS SIASEKPKNC APATPIEDRG SSSPSGMLSH SERVPVCSPQ 420 SAPSASPDMC KIEEIMNQQG TLEADTSNAS VNQSPESKTF PISSPDNQDI EREFPSPTPR 480 PENKEPVVDN SGLTPASPEK LANTHSPGSD PCKMEAIVNR QKLPGAGTSN SSDNHYPQSS 540 NKDLEGEYLS PIARSDNKEP AVDNSLPTLP ATENLRMNSA SDADTCKMEV TVNQQKPLEM 600 DALNASLNQS SGSNIFPVSS TDNQGIERAC PTPTPGSGNK VPSLDNSGSA APENFTTATA 660 SASDACKMEE ILDKKTTLET DASNGSVAPL QSKVSVVTSP DNLDIERECP SPAHRSENKE 720 PLADDSVLMS AAPENAPTTA SAFNGCKMEE TLNKKTVFET DVSNCPVSPS PQSKEFTASP 780 DNKDIQQQYS NPIPENKEPV VDNTGLILTS PENFTTKVPG DSKDAFASPK SDPPTGKLNA 840 TLTDFKGVEE IIQNELYSES IVVTRENMVI DPSCGAESID VSDVLESLME QNGTAALEDL 900 LAASAEEEPQ CSSPIVLSPW GEPSYYQGDA VDSTLWGVQD DSVNDMWSLL PPTPALQPSS 960 DLGTEANETL HINKVAASHG VIEFLQRGGT PAEENVNQAL SGAATDWVLP EQVKSTPNDV 1020 STHESTGIVG WQPSADQRLS VVTALGTNQS LYLPGCEKAA TSSKSSLEAS RKQESTDSCV 1080 SSSGEAIGNI TKGLNPPSVN ANRGRQQNHR RGRYSEISES WLLSSNNSRS RSDRFGNGGS 1140 SRSTLNGQNR GVCKFHEGGY CRKGASCSYL HP

Sequence ? help Back to Top

Protein Sequence Length: 1172 aa Download sequence Send to blast

MFGTNLSRIR ADTTKSRRKS KYRNSMQNHT QKIDDANHHP KNLSTESTIR GSKTGRKLEN  60
FHPTNGTDIP KPSTVYEAGS LSSSVLTVSS ETEPEKVWHY KDPSGNVQGP FTLLQLSKWT  120
TYFPRDLRVW LTFESEERSL LLTEVLSKQQ TVFTQTASVS TSIKATSAGI ELNINSPNVD  180
QKNALSPSGY SMLNSSVITG QTNKYSVPER GSVNSPDDCL SLSTPSVPPK DVQTLNSQVQ  240
FQTKHSVSVH SPGSPYGQTD LQQDGVQGGC SGESNHRHSS GALRSSVPAQ MNYSGNSNVA  300
SHHHNQRTLW LQSQHDPRNS SQGVSVKDLS NNLPTQRVGK DVPNPVIAWS PSESRTASSQ  360
HDGSCLSSTT NPSFLDDHHS SIASEKPKNC APATPIEDRG SSSPSGMLSH SERVPVCSPQ  420
SAPSASPDMC KIEEIMNQQG TLEADTSNAS VNQSPESKTF PISSPDNQDI EREFPSPTPR  480
PENKEPVVDN SGLTPASPEK LANTHSPGSD PCKMEAIVNR QKLPGAGTSN SSDNHYPQSS  540
NKDLEGEYLS PIARSDNKEP AVDNSLPTLP ATENLRMNSA SDADTCKMEV TVNQQKPLEM  600
DALNASLNQS SGSNIFPVSS TDNQGIERAC PTPTPGSGNK VPSLDNSGSA APENFTTATA  660
SASDACKMEE ILDKKTTLET DASNGSVAPL QSKVSVVTSP DNLDIERECP SPAHRSENKE  720
PLADDSVLMS AAPENAPTTA SAFNGCKMEE TLNKKTVFET DVSNCPVSPS PQSKEFTASP  780
DNKDIQQQYS NPIPENKEPV VDNTGLILTS PENFTTKVPG DSKDAFASPK SDPPTGKLNA  840
TLTDFKGVEE IIQNELYSES IVVTRENMVI DPSCGAESID VSDVLESLME QNGTAALEDL  900
LAASAEEEPQ CSSPIVLSPW GEPSYYQGDA VDSTLWGVQD DSVNDMWSLL PPTPALQPSS  960
DLGTEANETL HINKVAASHG VIEFLQRGGT PAEENVNQAL SGAATDWVLP EQVKSTPNDV  1020
STHESTGIVG WQPSADQRLS VVTALGTNQS LYLPGCEKAA TSSKSSLEAS RKQESTDSCV  1080
SSSGEAIGNI TKGLNPPSVN ANRGRQQNHR RGRYSEISES WLLSSNNSRS RSDRFGNGGS  1140
SRSTLNGQNR GVCKFHEGGY CRKGASCSYL HP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462903912

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008660562.1	0.0	uncharacterized protein LOC103639609
TrEMBL	A0A1E5UT96	0.0	A0A1E5UT96_9POAL; Zinc finger CCCH domain-containing protein 44
STRING	GRMZM2G393471_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2709	18	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	3e-14	nucleic acid binding;zinc ion binding;DNA binding