PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462903912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 1172aa MW: 125704 Da PI: 4.8651 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.6e-06 | 1152 | 1172 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+++G+C+ G++C++ H+ 462903912 1152 VCK-FHEGGYCRKGASCSYLHP 1172 688.*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55277 | 1.22E-15 | 90 | 150 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 14.231 | 95 | 147 | IPR003169 | GYF domain |
SMART | SM00444 | 9.8E-13 | 96 | 149 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 1.3E-15 | 97 | 151 | IPR003169 | GYF domain |
Pfam | PF02213 | 3.3E-10 | 98 | 137 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 12.455 | 1147 | 1172 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1172 aa Download sequence Send to blast |
MFGTNLSRIR ADTTKSRRKS KYRNSMQNHT QKIDDANHHP KNLSTESTIR GSKTGRKLEN 60 FHPTNGTDIP KPSTVYEAGS LSSSVLTVSS ETEPEKVWHY KDPSGNVQGP FTLLQLSKWT 120 TYFPRDLRVW LTFESEERSL LLTEVLSKQQ TVFTQTASVS TSIKATSAGI ELNINSPNVD 180 QKNALSPSGY SMLNSSVITG QTNKYSVPER GSVNSPDDCL SLSTPSVPPK DVQTLNSQVQ 240 FQTKHSVSVH SPGSPYGQTD LQQDGVQGGC SGESNHRHSS GALRSSVPAQ MNYSGNSNVA 300 SHHHNQRTLW LQSQHDPRNS SQGVSVKDLS NNLPTQRVGK DVPNPVIAWS PSESRTASSQ 360 HDGSCLSSTT NPSFLDDHHS SIASEKPKNC APATPIEDRG SSSPSGMLSH SERVPVCSPQ 420 SAPSASPDMC KIEEIMNQQG TLEADTSNAS VNQSPESKTF PISSPDNQDI EREFPSPTPR 480 PENKEPVVDN SGLTPASPEK LANTHSPGSD PCKMEAIVNR QKLPGAGTSN SSDNHYPQSS 540 NKDLEGEYLS PIARSDNKEP AVDNSLPTLP ATENLRMNSA SDADTCKMEV TVNQQKPLEM 600 DALNASLNQS SGSNIFPVSS TDNQGIERAC PTPTPGSGNK VPSLDNSGSA APENFTTATA 660 SASDACKMEE ILDKKTTLET DASNGSVAPL QSKVSVVTSP DNLDIERECP SPAHRSENKE 720 PLADDSVLMS AAPENAPTTA SAFNGCKMEE TLNKKTVFET DVSNCPVSPS PQSKEFTASP 780 DNKDIQQQYS NPIPENKEPV VDNTGLILTS PENFTTKVPG DSKDAFASPK SDPPTGKLNA 840 TLTDFKGVEE IIQNELYSES IVVTRENMVI DPSCGAESID VSDVLESLME QNGTAALEDL 900 LAASAEEEPQ CSSPIVLSPW GEPSYYQGDA VDSTLWGVQD DSVNDMWSLL PPTPALQPSS 960 DLGTEANETL HINKVAASHG VIEFLQRGGT PAEENVNQAL SGAATDWVLP EQVKSTPNDV 1020 STHESTGIVG WQPSADQRLS VVTALGTNQS LYLPGCEKAA TSSKSSLEAS RKQESTDSCV 1080 SSSGEAIGNI TKGLNPPSVN ANRGRQQNHR RGRYSEISES WLLSSNNSRS RSDRFGNGGS 1140 SRSTLNGQNR GVCKFHEGGY CRKGASCSYL HP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462903912 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008660562.1 | 0.0 | uncharacterized protein LOC103639609 | ||||
TrEMBL | A0A1E5UT96 | 0.0 | A0A1E5UT96_9POAL; Zinc finger CCCH domain-containing protein 44 | ||||
STRING | GRMZM2G393471_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2709 | 18 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 3e-14 | nucleic acid binding;zinc ion binding;DNA binding |