PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903426
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 792aa    MW: 85763.9 Da    PI: 5.83
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903426genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-20100155156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  462903426 100 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 155
                688999***********************************************998 PP
2START196.31.4e-613135311206
                HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT.. CS
      START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg.. 88 
                ela +a++elv++a++++p+W   +   +++++e+ + f+   +      + ea+r+s+vv+m+   lve+l+d ++    ++  + +a++++ +ssg  
  462903426 313 ELAVAAMDELVRMAQLDAPLWGMGPagAQLDEEEYARMFPGRIGprqygLRAEASRDSAVVIMTRDSLVEILMDANRfasVFSSIVSRASVHDLLSSGva 412
                57899**********************************77766***99***************************77777788888************* PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                    galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg++i++++ng+skvtwvehv++++r++h+++++
  462903426 413 gsynGALQVMSMEFQVPSPLVPtRESYFVRYCKHNTDGTWAVVDVSLDSLRPGP----VLKCRRRPSGCIIQEMPNGYSKVTWVEHVEVDDRSVHNIYKP 508
                *****************************************************9....7***************************************** PP

                HHHHHHHHHHHHHHHHTXXXXXX CS
      START 184 lvksglaegaktwvatlqrqcek 206
                lv+sgla+gak+wv tl+rqce+
  462903426 509 LVNSGLAFGAKRWVGTLDRQCER 531
                *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-2479155IPR009057Homeodomain-like
SuperFamilySSF466893.63E-1984155IPR009057Homeodomain-like
PROSITE profilePS5007116.74697157IPR001356Homeobox domain
SMARTSM003894.8E-1898161IPR001356Homeobox domain
CDDcd000866.97E-19100155No hitNo description
PfamPF000463.9E-18100155IPR001356Homeobox domain
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PROSITE profilePS5084838.962304534IPR002913START domain
SuperFamilySSF559611.31E-31305533No hitNo description
CDDcd088756.83E-117308530No hitNo description
SMARTSM002341.4E-55313531IPR002913START domain
PfamPF018521.0E-50314531IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-6406530IPR023393START-like domain
SuperFamilySSF559618.24E-24553782No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MTPARRMPAM IGRNGVAYGS SSALSLNQVD LLDNQHLQQA FQQQLFDQIP AAGVDSGDNM  60
IHGHADTLAD EFESKSCSEN PDGTSGDDGQ EDPNQRPNKK KRYHRHTQHQ IQEMEAFFKE  120
CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKANLYT NGQTEFCIAH NQHERQENAQ  180
LRAENDKLRS ENLRYKEALS TASCPSCGGP AALGEMSFDE HHLRIENARL RDEIDRISGI  240
AAKHVGKPMV SFPVLSSPLA AAAARSPLDL AGAYGVQPPS LAADIFGVGA GARELLRNVS  300
TGQLDADKPM IIELAVAAMD ELVRMAQLDA PLWGMGPAGA QLDEEEYARM FPGRIGPRQY  360
GLRAEASRDS AVVIMTRDSL VEILMDANRF ASVFSSIVSR ASVHDLLSSG VAGSYNGALQ  420
VMSMEFQVPS PLVPTRESYF VRYCKHNTDG TWAVVDVSLD SLRPGPVLKC RRRPSGCIIQ  480
EMPNGYSKVT WVEHVEVDDR SVHNIYKPLV NSGLAFGAKR WVGTLDRQCE RLASVMASNI  540
PNGDLGVITS IEGRKSMLKL AERMVASFCG GVTASAAHQW TTLSGSGAED VRVMTRKSVD  600
DPGRPPGIVL NAATSFWIPV SPKRVFDFLR DETSRSEWDI LSNGGAVQEM AHIANGRDHG  660
NCVSLLRVNS ANSNQSNMLI LQESCTDSSG SYVVYAPVDV VAMNVVLNGG DPDYVALLPS  720
GFAILPDGPP GAAADGENAA GGGALLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER  780
IKAAICVEAN PQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972697.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLK3YGB70.0K3YGB7_SETIT; Uncharacterized protein
STRINGSi013285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]