PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903370
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 352aa    MW: 37293.6 Da    PI: 5.4027
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903370genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.91.7e-21249311163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++
  462903370 249 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAESLRSENSSLRAELERIRKEYEQLLSQN 311
                89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.5E-28197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-19130232No hitNo description
Gene3DG3DSA:1.20.5.1708.0E-17245310No hitNo description
PfamPF001701.0E-19249311IPR004827Basic-leucine zipper domain
SMARTSM003387.2E-21249313IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.288251314IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-10252309No hitNo description
CDDcd147029.02E-25254304No hitNo description
PROSITE patternPS000360256271IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGSNDPSTPS KASKASEQDQ PPATTSGTTA SVYPEWPSFQ AYSAMPPHGF FPPPVAANPQ  60
AHPYMWGAQP IVPPYGTPPP PYVMYPPGTV YAHPSTPSGM HPFNHYPMPS NGNAEIPGAA  120
PSAPEMNGRS EPGRTSGPSA NGITSHSESG SDSESDGSDA NSQNDSHSKE NGGKEDGSSQ  180
NGTSYSASQG MVNQAMSMLP VQPGAMVGVP GSTSNLNIGV DYWAAPGSAA VPAMHGKAPA  240
GSARDQWDER ELKKQKRKQS NRESARRSRL RKQAECEELG QRAESLRSEN SSLRAELERI  300
RKEYEQLLSQ NASLKGRLGG TSDSVPDMNE QNDGDGISKK QPDYDAQPGS EP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271RRSRLRK
2265272RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952026.10.0transcription factor HBP-1a
SwissprotP239221e-145HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLK3YTP10.0K3YTP1_SETIT; Uncharacterized protein
STRINGSi017637m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-66basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]