 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462903181 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 281aa MW: 30913.1 Da PI: 10.6354 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462903181 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 45 | 4.2e-14 | 1 | 116 | 1 | 87 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd................maflqrdkalae 69
mdddgs rn+g+ye k nlglqlmss++ +rd+k+ +++ +++++++++rd m+f++++++l
462903181 1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSSVTsDRDTKPllpnggtflqhhgHHNAPHQHHPQHSHHPRDcggasggmpnepssvhMDFVRNEAWLLP 97
9*****999******988...************99****************855333333566778889999*************************987 PP
GAGA_bind 70 .rnkalverdnkllalllv 87
++++ ++r++k+l+ l+v
462903181 98 sQHQHQHPRQQKVLHHLPV 116
588999*******998876 PP
|
| 2 | GAGA_bind | 275.1 | 3.5e-84 | 130 | 278 | 151 | 300 |
GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
+krq++++pk++k kk+kk +++++ ++++ +r + ++k +++v+ng++lD s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkr
462903181 130 HKRQQNRQPKTPKPKKPKK-VVAPREDGEPNRPASRGRGPRKAVGMVINGIDLDLSRIPTPVCSCTGTPQQCYRWGAGGWQSACCTTSISTYPLPMSTKR 228
57899**************.557878888888779***************************************************************** PP
GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
rgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti
462903181 229 RGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 278
*************************************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYETVKG NLGLQLMSSV TSDRDTKPLL PNGGTFLQHH GHHNAPHQHH 60
PQHSHHPRDC GGASGGMPNE PSSVHMDFVR NEAWLLPSQH QHQHPRQQKV LHHLPVGPVG 120
HVGHPGHGGH KRQQNRQPKT PKPKKPKKVV APREDGEPNR PASRGRGPRK AVGMVINGID 180
LDLSRIPTPV CSCTGTPQQC YRWGAGGWQS ACCTTSISTY PLPMSTKRRG ARIAGRKMSQ 240
GAFKKVLEKL AGEGYNLNNP IDLKTFWAKH GTNKFVTISC L
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP099933 | 1e-137 | FP099933.1 Phyllostachys edulis cDNA clone: bphyem110m15, full insert sequence. |
