PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902581
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 620aa    MW: 69271.3 Da    PI: 7.2847
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902581genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.5e-141371953296
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +l++ +g+ W v l  + +  r++lt+GW +Fv++n L+eg+f+v k    se++l+++v
  462902581 137 MAAAAQLKNAEGKAWPVAL--EENNARVFLTTGWPKFVEDNCLREGEFLVVK----SEGNLHFMV 195
                344689*************..99999**************************....444445444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1566200IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-6108201IPR003340B3 DNA binding domain
CDDcd100172.43E-12115198No hitNo description
SuperFamilySSF1019366.67E-15116205IPR015300DNA-binding pseudobarrel domain
PfamPF023629.8E-12117196IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746125201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MPNQNLFSSQ RENSGDGEPF PFGAPAEVAS GRPHHDPGGK SEGGREGDRP RKHSAVPALL  60
MEEATTPRFF KVLVGDFARR IVSRILSSSS SSSSSQLGSG VHCGKIAIFG PAEPLEIPQA  120
FLCHIPEESR RLSENSMAAA AQLKNAEGKA WPVALEENNA RVFLTTGWPK FVEDNCLREG  180
EFLVVKSEGN LHFMVLMFGV NAVERSVWSS RGATGNLDGK PPCDIFPFRR GNSGDQSTEM  240
AASITHGHSK TVILQSTQRD AHISSHDELG ACLSCKWPME DDKAKAIAKV MRTFDMDRLT  300
VELFCATLGL YKWNVDAAAE EFDICKGKQQ ISPELSLKKK LVVQFSFVKE QLRHFFPQDD  360
NSCAPMHERW KNRLDMTNLS NQSLPCDLTP AKRKLVDKHE SCDLSHQQKR GVGKLQRGSP  420
HTETPRRSPR LAHLKNISDR TNNSLKERSE ILEPSLTQEN QVKDRANKSC LLYEKHDCVL  480
KGVHEEVRGS LSQDFRKSEP MHNQIENGEK QTEKSALLTS ETFISTGSTE TWSLPTNSKL  540
TSDSRITELS VTWKSSQQGN PLENILLDIE RVNFMNTIAH IQKIIRDELP DLQTADIIEN  600
IVRIGIPKWD LCLRDSNAQK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902581
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969801.10.0B3 domain-containing protein Os03g0120900
TrEMBLA0A368RAE40.0A0A368RAE4_SETIT; Uncharacterized protein
STRINGSi005032m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-09B3 family protein