PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MIKC_MADS

Protein Properties

Length: 213aa MW: 24683.8 Da PI: 10.7605

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462900874	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.9	4.8e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n +nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+lye+ss 462900874 9 ERIDNRTNRQVTFSKRRSGLMKKARELGILCDADVGLIVFSCTGRLYEFSS 59 69***********************************************96 PP
2	K-box	73.5	5.9e-25	84	171	11	98
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 a+a+ +q+e++ L+++++nLq ++RhllGe+L+ L+ ++Lq L++q+e sl++iR+kK++ll e+i +l +k lq+en +L+k++ 462900874 84 IAEAKFWQREVTTLRQQVQNLQLNNRHLLGEELSGLTARDLQFLQSQVEMSLQSIRKKKEQLLAEEIMQLNQKGLVLQKENIELKKEV 171 57889********************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.202	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-32	2	80	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.54E-40	2	71	No hit	No description
PRINTS	PR00404	1.4E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-27	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.6E-23	86	171	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.849	87	177	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGRGKIAIER IDNRTNRQVT FSKRRSGLMK KARELGILCD ADVGLIVFSC TGRLYEFSST 60 SMKSIIERYQ EAREENNCRL LNRIAEAKFW QREVTTLRQQ VQNLQLNNRH LLGEELSGLT 120 ARDLQFLQSQ VEMSLQSIRK KKEQLLAEEI MQLNQKGLVL QKENIELKKE VSIAHRHKME 180 LQKKGKALRV IANKLAEALI KLTERNKKIG MHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-23	1	87	1	87	MEF2C
5f28_B	6e-23	1	87	1	87	MEF2C
5f28_C	6e-23	1	87	1	87	MEF2C
5f28_D	6e-23	1	87	1	87	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462900874

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967658.1	1e-106	MADS-box transcription factor 25 isoform X1
Refseq	XP_022682316.1	1e-106	MADS-box transcription factor 25 isoform X1
Swissprot	Q84NC5	1e-98	MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBL	A0A368R0W5	1e-105	A0A368R0W5_SETIT; Uncharacterized protein
STRING	Pavir.J07457.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP614	35	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	3e-64	AGAMOUS-like 44

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]