PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462900811
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 750aa    MW: 81852 Da    PI: 5.3001
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462900811genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-161467352
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
               k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR
  462900811 14 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaNVDPKQIKVWFQNRR 67
               6789*************************************************9 PP
2START175.33.7e-55712782204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g+++l +++l+
  462900811  71 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGnnGTIELLYMQLY 169
                789*******************************************************.8888888888******************9************ PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+ +Ry+  l++g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s+++ ++kt
  462900811 170 APTTLAPaRDFWLLRYTSILEDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMIAQKT 269
                ***************************************999999******************************************************* PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                 +a+l++++
  462900811 270 SMAALRYLR 278
                *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.507967IPR001356Homeobox domain
SMARTSM003894.8E-101177IPR001356Homeobox domain
CDDcd000861.64E-131467No hitNo description
PfamPF000462.5E-141467IPR001356Homeobox domain
SuperFamilySSF466898.98E-141567IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-151766IPR009057Homeodomain-like
PROSITE profilePS5084824.84861280IPR002913START domain
CDDcd088752.60E-7467279No hitNo description
Gene3DG3DSA:3.30.530.204.4E-2367275IPR023393START-like domain
SuperFamilySSF559618.79E-3770280No hitNo description
SMARTSM002345.4E-4470280IPR002913START domain
PfamPF018527.3E-5371278IPR002913START domain
PfamPF086702.6E-49606749IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MVTAKEAAAM DASKYVRYTP EQVEALERLY YECPKPSSLR RQQLVRDCPV LANVDPKQIK  60
VWFQNRRLMS IAEETLTEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH GCAGVAARAC  120
GLVGMEPAKV AEILKDRPLW LRDCRSMEVV NVLPAGNNGT IELLYMQLYA PTTLAPARDF  180
WLLRYTSILE DGSLVVCERS LSSKQGGPSM PLVQPFIRGE MLPSGFLIRP SDGGGSVIHI  240
VDHMDLEPWS VPEVVRPLYE SSAMIAQKTS MAALRYLRQV AHDDTQSVIT GWGRQPAALR  300
ALSQKLTRGY NEALNGLADD GWSVIESDGV DDVCIAVNSS PSKVVNCNAT FNNGLPIVSS  360
SVLCAKASML LQDVSPASLL RFMRENRSQW ADSNLDAFFA SAMKPNFCNL PLSRLGGFSG  420
QVILPLAHTF EPEEFLEVIK LGNVSNYQDT LMHRDLFLLQ MYNGVDENTA GTCSELIFAP  480
IDASFSDDSP LLPSGFRIIP IDSPLDSSSP NCTLDLASTL EVGTPRSRMT GNGSGNATCA  540
GSKAVMTIAF QFAFESHLQD SVATMARQYM RSIIQSVQRI ALALSSSRPV PQCGINHTPA  600
SPEATTLSRW ICQSYRLHFG AELVKPADSS GCEPGLIALW HHSSAILCCS LKAMPVFTFA  660
NQSGLDMLET TLVALQDITL EKVFDDQGRK NLCTELPSIM EQGFACIPGG LCVSSLGRPV  720
SYEKALAWKV LDDVNNAHCI CFMFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462900811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454995.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLC5XLT30.0C5XLT3_SORBI; Uncharacterized protein
STRINGSb03g002660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein