 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462900732 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 203aa MW: 23369.2 Da PI: 10.4482 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462900732 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 100.6 | 5.9e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+
462900732 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
79**********************************************95 PP
|
| 2 | K-box | 103.6 | 2.5e-34 | 95 | 181 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+++s++qe+++Lk++ e+Lqr+qRh+lGedL++L++keLqqLe+qLe +l++ R+kK+++++eq++el++ke++l e nk+L++k+
462900732 95 GESQSWHQEMSRLKAKFESLQRSQRHMLGEDLGPLNIKELQQLEKQLEYALSQARQKKTQIMMEQVDELRRKERQLGELNKQLKNKV 181
5789********************************************************************************997 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.571 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.06E-31 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.38E-41 | 2 | 87 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 7.1E-31 | 96 | 181 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 16.985 | 97 | 187 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60
GYGPTALLDR MVNKTLEKYH DFCYNAQGSN TCFGGESQSW HQEMSRLKAK FESLQRSQRH 120
MLGEDLGPLN IKELQQLEKQ LEYALSQARQ KKTQIMMEQV DELRRKERQL GELNKQLKNK 180
VGWKLKVAVA TKLPKPPGLL MPP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB007505 | 2e-71 | AB007505.1 Triticum aestivum TaMADS#12 mRNA for MADS box transcription factor, complete cds. |
| GenBank | AM502873 | 2e-71 | AM502873.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM9B (WM9B gene). |
