PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462900444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 19901 Da PI: 9.4769 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68 | 8.9e-22 | 21 | 65 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 i +k +rqvtf+kR+ gi+KKA+EL LCda+vaviifs+ gk y 462900444 21 IPDKEKRQVTFTKRKGGIFKKASELILLCDADVAVIIFSEAGKPY 65 7899**************************************966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-27 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.866 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-26 | 12 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-18 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-22 | 21 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-18 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-18 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MTTVVNRKQS KGRQVIKIEY IPDKEKRQVT FTKRKGGIFK KASELILLCD ADVAVIIFSE 60 AGKPYALSSP SVDDILSRFT RDDAEDDAPA LIQGVADRGA VEAIERQVEE GKALVAAEML 120 RLRAAGDKVM QAAAAAGKKF WWEVDVEALG MEELPVFDSA LKRLRDNLRN HVKKMLKTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 12 | 111 | 2 | 95 | MEF2C |
5f28_B | 2e-16 | 12 | 111 | 2 | 95 | MEF2C |
5f28_C | 2e-16 | 12 | 111 | 2 | 95 | MEF2C |
5f28_D | 2e-16 | 12 | 111 | 2 | 95 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462900444 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811768.1 | 2e-54 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1E5UM65 | 4e-53 | A0A1E5UM65_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J29996.1.p | 4e-49 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-24 | AGAMOUS-like 29 |