PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462899907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 46328.9 Da PI: 9.331 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 9.2e-09 | 99 | 121 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+f+++t Ck+G CkF+H 462899907 99 SECQFYMKTEDCKFGVVCKFHHH 121 68********************7 PP | |||||||
2 | zf-CCCH | 30.2 | 7.7e-10 | 230 | 255 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++ Ck+G CkF+H++ 462899907 230 DQPECQFYMKIEDCKFGVVCKFHHPK 255 689*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.592 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.49 | 96 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.22E-5 | 98 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.24 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.22 | 228 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-6 | 230 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.334 | 375 | 395 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MSVLYEDRRL RTTTTPRRAH MHFLLSLWNV QVWSKMKIRS SNASRHVQPC FITGVRSQLL 60 DVCWHMYHRI RIVFRPHIQS SWLCSSCALC STEGLLDKSE CQFYMKTEDC KFGVVCKFHH 120 HKDRTVPVPN CALSSAELPL RLGEPICTFY YRYGMFNRHV QPSFITGVRS QLLDVCWHMY 180 HRIRIVFRPH IQSSDSNPSR TLNKSSIECH VIIPLLFAVQ RGNVFLNRPD QPECQFYMKI 240 EDCKFGVVCK FHHPKDRTVP VPNCALSSVE LPLRLGEPIC TFYYRYGILV QNENSIIQCK 300 PSCTAFLHHQ PVRSQLLDVC WHMYHRIRIV FRPHSPYIGR MYSYTDLRNQ NFHHPKNRTV 360 SAPNCVLSSI ELPPRSGEPI CTFYSHYGMF KFGPK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462899907 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 1e-43 | zinc finger nuclease 3 |