PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462899814

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 311aa MW: 33738.2 Da PI: 6.7918

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462899814	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41.9	2.3e-13	37	64	1	28
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAt 28 kprlrWt eLHerFv+av+qLGG++ A 462899814 37 KPRLRWTVELHERFVDAVTQLGGPDTAA 64 79***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-12	34	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-7	37	63	IPR006447	Myb domain, plants
Pfam	PF14379	1.7E-24	87	133	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MFPSKKATSA AAAAVSSNDR GMCVQGDSGL VLTTDPKPRL RWTVELHERF VDAVTQLGGP 60 DTAAMEMQRN AASSSGMMGR GINDRNHMNE AIRMQMEVQR RLHEQLEVQK HLQIRIEAQG 120 KYMQNILQKA YQTIASGDVV SCPAGYKSLG NQGILDVCSL KDMGPSMGFP SLQDLHMYGG 180 GHLDLHQQMD RPMDSFFACS DGSIGSLGKK RPNPYAATGK SPMMWGDDEQ GKLSDHLQMA 240 PPMIDAGIDV MDSIADVYGD AKSMMSGDSS AGSKGFDGKL ERPSPRRPHM GGERMDSPSV 300 MGGQTRNMSY G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462899814

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119588	5e-45	AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.
GenBank	AP003628	5e-45	AP003628.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0473H04.
GenBank	AP014962	5e-45	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	5e-45	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CT841760	5e-45	CT841760.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103B02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799290.1	0.0	myb family transcription factor APL
Swissprot	Q9SAK5	6e-61	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1E5VH39	0.0	A0A1E5VH39_9POAL; Myb family transcription factor APL
STRING	Pavir.Aa03369.1.p	1e-171	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-61	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]