PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462899802

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 205aa MW: 22378.8 Da PI: 7.2546

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462899802	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00033	163	182	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + s a++L +Ave+I+ Lq 462899802 163 RQTSTADMLDLAVEHIRGLQ 182 4599***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-5	161	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-5	162	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
SLPRHSSSPP GFFSSPVVDN GFPSARVGGN EVHQTMSTYN KKMKSPMNLA RQGTLAQISE 60 DVTEHMHAIG PSEESITTSN VVRSFSGGFS IGSWEDSNSI AFSSPSSKAG IHNNDDIIAT 120 LSNYELQFGV TKEANLQMQQ DQVPFRVRAK RGCATHPRSI AERQTSTADM LDLAVEHIRG 180 LQSEVQALKE DKEKCTCRGN HSSRN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462899802

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825346.1	2e-99	transcription factor bHLH129-like
TrEMBL	A0A2S3I7V0	4e-98	A0A2S3I7V0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CWM6	3e-98	A0A2T7CWM6_9POAL; Uncharacterized protein
STRING	Pavir.Gb01377.1.p	5e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14188	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	6e-25	bHLH family protein