PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899555
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 393aa    MW: 41249.2 Da    PI: 6.605
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899555genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.4e-09651011953
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                Fe   ++yp+ +++  LAk++gLt +qV++WF N R 
  462899555  65 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARV 101
                664459****************************995 PP
2BELL60.15.1e-201423071
       BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71
               +q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia q
  462899555  1 MQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIAAQ 42
               9**************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.7E-15140IPR006563POX domain
PROSITE profilePS5007110.67343100IPR001356Homeobox domain
SMARTSM003893.5E-646110IPR001356Homeobox domain
CDDcd000863.74E-1246100No hitNo description
SuperFamilySSF466892.57E-1448101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-2449100IPR009057Homeodomain-like
PfamPF059208.4E-1863101IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.601.0E-6101121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MQAVSSSFEA AAGAGSARTY TALALRTISR QFRCLRDAIA AQGGAWRPQR GLPERSVSIL  60
RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR VSNWFINARV RLWKPMVEEM  120
YLEETKDRDA AAGGNVDEGK SAGAGNDNSA GGDVTPRAGG GGAAMSKAAA RLDNSASTKG  180
VVHGGSTLLE LAGDQQQAAH AGFYDDDEED GDEQRRLKKA RGGDEPSTFQ HHHGHHVHDM  240
AALHAQAAAG GRQQHEEVSH RELLMKFMES GGAGAARTAE QHHQDEGGYS SLFAAHHQAQ  300
AAYGQFTSEP FAAFAGNNGG VSLTLGLPHG AGTGADQSTA SFLMGGSTVT SDSAGGGGGT  360
VTSDSAGGGG GYDMTNMQGT KSFAAQLMRD FVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13521001462Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899555
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0559793e-74BT055979.2 Zea mays full-length cDNA clone ZM_BFc0087K12 mRNA, complete cds.
GenBankBT0852413e-74BT085241.2 Zea mays full-length cDNA clone ZM_BFb0339N15 mRNA, complete cds.
GenBankBT0860923e-74BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978738.11e-144BEL1-like homeodomain protein 1
RefseqXP_004978743.11e-144BEL1-like homeodomain protein 1
RefseqXP_004978744.11e-144BEL1-like homeodomain protein 1
RefseqXP_012703953.11e-144BEL1-like homeodomain protein 1
RefseqXP_022684940.11e-144BEL1-like homeodomain protein 1
TrEMBLA0A1E5WEK51e-145A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRINGSi026085m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-45BEL1-like homeodomain 7