PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462899347 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 136aa MW: 15448.6 Da PI: 9.3785 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.5 | 3.1e-07 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H 462899347 23 YVCEICGQGFQRDQNLQMHRRRH 45 9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.85E-6 | 20 | 46 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-6 | 22 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.635 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0032 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 65 | 95 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDADPDAEVV SLSPRTLLES DRYVCEICGQ GFQRDQNLQM HRRRHKVPWK LLKREAGEAA 60 RKRVFVCPEP SCLHHDPAHA LGDLVGIKKH FRRKHSGHRH YVSSVVTTDA EVVGERHDDA 120 GGARRRQAVA KLMDVL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462899347 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004585 | 1e-129 | AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03. | |||
GenBank | AP006461 | 1e-129 | AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02. | |||
GenBank | AP014964 | 1e-129 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | KU494020 | 1e-129 | KU494020.1 Hordeum vulgare subsp. vulgare broad leaf 1 (BLF1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444487.1 | 1e-63 | protein indeterminate-domain 14 | ||||
Refseq | XP_006660192.1 | 4e-64 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Refseq | XP_022679694.1 | 6e-64 | protein indeterminate-domain 16 isoform X1 | ||||
Swissprot | Q9C9X7 | 6e-60 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A453KYW3 | 2e-65 | A0A453KYW3_AEGTS; Uncharacterized protein | ||||
STRING | EMT07914 | 4e-65 | (Aegilops tauschii) | ||||
STRING | Pavir.Fa00691.1.p | 6e-65 | (Panicum virgatum) | ||||
STRING | Pavir.J40191.1.p | 1e-63 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 2e-62 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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