PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462899275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17942.4 Da PI: 4.378 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr+p gk++r++lg+f ++e+Aa a++ a + l+g 462899275 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAELWLRG 68 69****999.**********8...557*******************99876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 19 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 19 | 78 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-35 | 19 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 19 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-27 | 19 | 77 | No hit | No description |
Pfam | PF00847 | 4.6E-10 | 20 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEMMLDNVAG EAAGEVAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SPEMAAVAHD 60 VAELWLRGRD ARLNFPVEAA AQVRFMPNLV MQQPGCGGGR EGPDVAWDVL LGADELAAES 120 RNMWAELAEA MLMAPPVWEG SLADNDEWAQ GSLWELPVWN Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 19 | 78 | 5 | 65 | ATERF1 |
3gcc_A | 2e-15 | 19 | 78 | 5 | 65 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462899275 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC119671 | 2e-51 | AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence. | |||
GenBank | AC135460 | 2e-51 | AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence. | |||
GenBank | AP014967 | 2e-51 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 2e-51 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828349.1 | 2e-71 | ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A0A1E5VJX2 | 7e-75 | A0A1E5VJX2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J22217.1.p | 3e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-30 | ERF family protein |